Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1724 ATGGTTGGGTTGGAGCTCGTTCCCATAGGTACAATTCTGACATTGGTAACTTCACAAATCTTGAAAACAGCTCAAGCAGCATCTGATGTTCTTGTTGGTAAAGAAAGTTTCAAGGCCCTTTCAAAACATCTATTTGATATTGAGCCAGTGCTGAAGGAATTGCAGCTTCAAGAATTGAATGACTCTCAAGCCGCAAGAGTTGCTCTGGAGTCTCTTGAAGCAGATGTTAAGAAGGCAAATAATTTGGTGGAAAAGTATAGGAACCGTGGCCGTTTTTACTTACTGATTAAGTGTCGATCAATTGTTGAGGAGGTTGAACAAGTCACAAGGGATATTGGAAAGTCTCTGGCTGCATTGTCTATTGCAAATACTGAAGTCCTATCAAGAATTTCTGATCAGGTGAATAGATTGCAAAATGAGATGCAAAGGGTGGAGTTTGAGGCTTCCCAGTCCCAGATTCAAATTGTTGACAAGTTAAACCAGGGACTTAGAGAACAGAAACTAGATCAGGCTTTTGCAAATGACATGTTAGAGGAGATAGCAAGGGCAGTTGGGGTGCCAGTGGAACCCTCGGAGATAAGCAAAGAGTTGGCTAGCATTAGGAAGGAAAAAGAAGAAGCTTCTGAAAGGAAAGAAAGAGCTGAATGTGTTCTTTTGGATCAGATCATTCAGTTACTCTCTCGAGCTGATGCTGCAAGGGATTATGAAGAAGTAGAGAGGCAATACTTTGAAAGGGTTAAGGTGATAGAGAGATATGGTTCAAGGGAAAAATATATCCCCCCACTCAATTCTTTCCATTGTTCTATTACTGGAGCTGTTATGGAAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGACATGCTATTGAAACTTGGTTTTACGATGGCAACAGGAAAGACCCAGAAACTAAAGAGGTTCTTGAAGATACTACCTTGAGGTCTAACATTCCTCTAAGACAATCTATTGAAGAATGGAGAGAACTTAATTATTGTCTGACAATAAGGTCTATCAGAGAAAATTTATTATCATCTTCTGACCTGCAAGAATCCTTGACCCAAATGCAGGATCTTGTAAGAAAGAATTCTATTAACAAGGATTGGATTTCTATAGGAGAGCTTACTGATATTGTTATCTCTATCCTTGGGAACTCTGATGACAAAGAAGTAAAGAGGAAGATTTTGATAACTTTGAAGGATGCCGTTGAGGGGAATACACGAAACAAGGAGAAAGTGGCTGAATCTCAAGGATGGGATCACATTCTTTCCTGCTTAGGGAGTGACTCTAGCATTTCCAAGGAAGCAATTGATCTGCTATATGAACTCCTTCAAGAACAATCTGGTTGGAATCAATATCTCTGTAAAAAGCTTTGTGAAAATCGCACTGCAGTTTGGTCCCTTGTTGCCCTTCTAAAGAATCTTTCCAGCCAGTCTTCCGAAGTTGCCGAAAAGATTTTGATGAAGCTTTTTGAACTAAACGAGGAAACCATTACTATTGCTGCTAATTTTGGCTGGTACAAACCACTTGTTGATCGCATGATTGAAGGACCAGATTCAAGAATATCAATGACAAAAGCCATTGTTAATTTGGAGTTGAATGCTTCAAACTTGAAAATCCTTGGCAACGAAGGAGTTATACCTCCTTTGCTAGAAATGCTGTCGGGAAGCGCTGAATCAAAAGACTTGTCATTGTCAGCCCTGATTAAATTAGCGGGATCTCATGGTAATAAAGGAATTATTGCTGCATCTGGAGGAGTTCCTCTTATTCTAGATTTAATGTTCTCTCCTCGGACACGGGCATTCATCATCATTAAATGCTCTGAAATCATCGAGAAGCTTTCTTCAAATGGTGATGGAATTGATTTCTTCGTTGATGGAGAGGGAAAACAGCTTGAGTTAGATTCCATCATCACCAAAGTACTAGCTTTGCAGCAGAGTTCCAGCTTAGGTCCTAACATACGTAAGCCTGCGCTGCGTGCACTTCTTGGCATTTGCAAATTTGAGACTGATTTGGTTAAGAAAGCAATTCTTGCAGCCAACGGTGTATCTCTAATTCTTCCACTTCTTGACGATCCCGACTCAGAAATCAGGGAGACCTCCATAATTCTACTCTATCTTTTCTCTCAACACGAGCCAGAAGGAGTAGTTGAATACCTTTTCAAGCCTAGGAGGCTTGAAGCCTTGATTGGATTTCTTGAGAATGAGGAGAATGATAATGTACAGATGGCTGCTGCTGGTTTACTTGCTAACCTGCCAAAATCAGAACGAGAACTCACTATGAAGTTGATTGAGCTGGGTGGACTTGACGCAATCATAAGCATTTTGAAAACTGGCAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGACCCTACAAATATTGAGTCACAGCAAGATCTGGTTAAACGCGGAATATACCCTTTGCTTGTAGATTTTCTCAACACTGGCTCAGTCACGGCAAAGGCAAGAGCAGCAGCTTTCATCGGTGATCTTTCGATCAGCACTCCAAAGCTCACAGTTATTCCAAAGCCAACTGGTTGCTGGCTTTTCAGATCATCACGTGTTCCTTTGTGTCCAGCACATGGGAGTGTATGCAGTGTGAACAGCACATTTTGTCTTTTGGAGGCTAAGGCTTTACCTGGTTTGATAAAGCTATTACATGGGGAGGTTCATGCCACTGCTTATGAAGCAATACAGACACTTTCCACATTGGTTTTGGAAGAATTTCCTCAAAGGGGAGCTCGTGTCTTGCATGAGAATAATACAATAAGATCCTTATTGGACATTTTGAACTGGGGAACTGATTCTCTCAAGGCAGAAGCTCTAGGACTGTTAGAGAAGGTGTTTGTGTCAAAGGAAATGGTAGAATATTATGGAACAACAGCTAGATCACGTCTTATTGGTTTGACTGGCATGAATATATATGGAGATGGTCACCTCAGGAGAAAGGCTGCCAAAGTACTATCATTGCTTGAACGCTATTCAAAGTCGTCATCATCTGCCATCTCCGGTGTTCTGGAGTGA 3042 0.4119 MVGLELVPIGTILTLVTSQILKTAQAASDVLVGKESFKALSKHLFDIEPVLKELQLQELNDSQAARVALESLEADVKKANNLVEKYRNRGRFYLLIKCRSIVEEVEQVTRDIGKSLAALSIANTEVLSRISDQVNRLQNEMQRVEFEASQSQIQIVDKLNQGLREQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIRKEKEEASERKERAECVLLDQIIQLLSRADAARDYEEVERQYFERVKVIERYGSREKYIPPLNSFHCSITGAVMEDPVSLCTGTTCERHAIETWFYDGNRKDPETKEVLEDTTLRSNIPLRQSIEEWRELNYCLTIRSIRENLLSSSDLQESLTQMQDLVRKNSINKDWISIGELTDIVISILGNSDDKEVKRKILITLKDAVEGNTRNKEKVAESQGWDHILSCLGSDSSISKEAIDLLYELLQEQSGWNQYLCKKLCENRTAVWSLVALLKNLSSQSSEVAEKILMKLFELNEETITIAANFGWYKPLVDRMIEGPDSRISMTKAIVNLELNASNLKILGNEGVIPPLLEMLSGSAESKDLSLSALIKLAGSHGNKGIIAASGGVPLILDLMFSPRTRAFIIIKCSEIIEKLSSNGDGIDFFVDGEGKQLELDSIITKVLALQQSSSLGPNIRKPALRALLGICKFETDLVKKAILAANGVSLILPLLDDPDSEIRETSIILLYLFSQHEPEGVVEYLFKPRRLEALIGFLENEENDNVQMAAAGLLANLPKSERELTMKLIELGGLDAIISILKTGKMEAKENALSALFRFTDPTNIESQQDLVKRGIYPLLVDFLNTGSVTAKARAAAFIGDLSISTPKLTVIPKPTGCWLFRSSRVPLCPAHGSVCSVNSTFCLLEAKALPGLIKLLHGEVHATAYEAIQTLSTLVLEEFPQRGARVLHENNTIRSLLDILNWGTDSLKAEALGLLEKVFVSKEMVEYYGTTARSRLIGLTGMNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLE* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1724 1013 SMART arm_5 712 754 IPR000225 GO:0005515
Vra8g1724 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Vra8g1724 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Vra8g1724 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Vra8g1724 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Vra8g1724 1013 SMART arm_5 799 839 IPR000225 GO:0005515
Vra8g1724 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Vra8g1724 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Vra8g1724 1013 Gene3D - 520 845 IPR011989 -
Vra8g1724 1013 Gene3D - 855 1009 IPR011989 -
Vra8g1724 1013 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Vra8g1724 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Vra8g1724 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Vra8g1724 1013 SUPERFAMILY ARM repeat 649 1001 IPR016024 -
Vra8g1724 1013 Coils Coil 127 154 - -
Vra8g1724 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 335 IPR013083 -
Vra8g1724 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Vra8g1724 1013 Coils Coil 62 89 - -
Vra8g1724 1013 Gene3D - 341 519 IPR011989 -
Vra8g1724 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Vra8g1724 1013 SUPERFAMILY RING/U-box 250 330 - -
Vra8g1724 1013 SUPERFAMILY ARM repeat 362 720 IPR016024 -
Vra8g1724 1013 Coils Coil 197 217 - -
Vra8g1724 1013 Gene3D - 6 124 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1724 Vra-Chr8 34431046 34436098 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1724 264 965 U-box Gene Family AT1G76390 28.762 8.91e-45 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1724 - - gmx:100783638 1733