Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1713 ATGGAGGGAAGAGAGAGTTTTGGTGTTGTGGTGGGTGATGAAGCCCCCGAGAGCTTTCATGTTGCTCCTAGAATAATTGAGAACAACTTGGACTTTTCAAGGGCCGTCGTGCCTGCGCCGTCGACGGAGGGTAAAAAGAAGAGAGGGAGACCGAGGAAGTATGGGCCGGACGGGAAGGTGGCTATGGATGCGGTGACGGCGCTTTCGCCGATGCCGATTTCATCGTCGATTCCGTTGACCGGCGAGTTCTCCGCTTGGAAGAGAGGCAGAGGAAGGCCTGTTGAATCTATCAAAAAGTCATCGTTCAAGTTTGAGGTTGAAAGCCCTGTTCAAGGTGATGGAATATCATACTCCGTTGGAGCCAATTTCACACCACATGTTCTCACAGTAAATTCTGGCGAGCAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGGACAATTTCAAATGTTACACTTCGTCAACCATCTTCTTGTGGGGGTACTTTAACATATGAGGGACGGTTTGAAATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAGTTACAAGAAGCAGATCTGGTGGCATGAGTGTCTCTTTGGCCGGTCCAGATGGTAGAGTAATGGGGGGTGGGCTTGCTGGTTTACTGGTAGCCGCTGGTCCAGTTCAGGTTGTTGTTGGCAGTTTTCTTCCTGGTCACCAGTTGGAGCATAAAAACAAGAAGCAAAGGGTGGAGCATATATCAACTATTACCCCTTCTCCTGTTAATATCATCTCCAGTGAGGAACTAAAAGTCAGTTTCGGTGGAGTAAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATTGTTTCTTTTAACAATGGTCAAGACTCTAGGAACTCAGCTCCTGATGATAGAGATCCTTTACCCGACAAGGAGTCTAATCTAGGCCAATCAAACGCTGAGGCTGCATGCTAA 957 0.4734 MEGRESFGVVVGDEAPESFHVAPRIIENNLDFSRAVVPAPSTEGKKKRGRPRKYGPDGKVAMDAVTALSPMPISSSIPLTGEFSAWKRGRGRPVESIKKSSFKFEVESPVQGDGISYSVGANFTPHVLTVNSGEQGSRAICILSATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEHKNKKQRVEHISTITPSPVNIISSEELKVSFGGVKPIMTPAAFQEENIVSFNNGQDSRNSAPDDRDPLPDKESNLGQSNAEAAC* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1713 318 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 9 306 - -
Vra8g1713 318 SUPERFAMILY AF0104/ALDC/Ptd012-like 122 231 - -
Vra8g1713 318 MobiDBLite consensus disorder prediction 36 58 - -
Vra8g1713 318 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Vra8g1713 318 SMART AT_hook_2 45 57 IPR017956 GO:0003677
Vra8g1713 318 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 227 IPR005175 -
Vra8g1713 318 CDD DUF296 124 227 IPR005175 -
Vra8g1713 318 Gene3D - 127 247 - -
Vra8g1713 318 ProSiteProfiles PPC domain profile profile. 107 251 IPR005175 -
Vra8g1713 318 MobiDBLite consensus disorder prediction 286 318 - -
Vra8g1713 318 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 306 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1713 Vra-Chr8 34283328 34290272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1713 45 281 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 51.408 1.98e-78 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1713 - - gmx:100776862 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1713 8 34283328 34290272 Vra1g0905 1 10546658 10552781 ECH
Vra8g1713 8 34283328 34290272 Vra8g1713 8 34283328 34290272 ECH
Vra1g0905 1 10546658 10552781 Vra8g1713 8 34283328 34290272 PCT