Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1709 ATGGCGTTTTCAGTACTGCTACTGTTGTTCTCTCTTGCGTTTTTGCTCTCAAACCCAACATGGGTGCGTGGGAATGGAGAGCTAAGAGCACTGATGGATTTGAAAGCCAGTTTGGATCCAGAGAGCCTTTATCTACCGTCTTGGACTGTCAATGGTGACCCATGTGGTGGATATTTTGAAGGAGTGGCATGCAATGAGAAGGGTCATGTGGCAAATATTTCTCTGCAGGGTAAGGGCCTCTCAGGGAAGCTTTCACCAGCCATTGCAGGGCTCAAGTACCTGACTGGACTCTACTTACATTATAACTCTCTGTATGGAGACATACCCAGAGAGGTTGCAAACTTGACTGAGCTTGTTGATTTGTATTTGAATGTAAACAATCTGTCTGGGGAAATCCCACGCGAGATAGCCACCATGGAGCACTTGCAAGTTTTGCAGCTTTGCTATAATCACTTGACTGGAAGCATTCCTACACAGCTAGGTGCTTTGAAAAAGCTGAGTGTTGTTGCATTGCAGTCAAACCAGTTAACTGGTGCTATCCCTGCTAGTCTAGGTGATTTGGGCATGCTGGCGAGGCTAGATTTGAGCTCTAATAATCTTTTTGGTTCCATTCCCACTAGTCTTGCCGAAGCTCCTTCACTGAGAGTTTTCGATGTTCACAACAACACCCTTTCTGGGAATGTACCTCCTGCTCTTAAGAGACTAGAGGATGGGTTTCTGTATGAGTACAATCTGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAAAGCTTGCAACGCTTCGGATCATGTCATTCCAAGCAGACCAGAGCCATATGGAGCAGCCACTAGAGATATCCCTGAAACTGCAAATGTGAAGTTGCCATGCAATGGTACTCAGTGCCTTAATTCATCAAAATCAAATCAATCCATATCAATTACTATTGTCATATTTGTGGTGATAATTGCAATGTCTGCAATTGGTATTTTGACATTCACACTGTATCGTCGGAGAAAGCAAAAGCTTGGAGGTTCTTTTCATATCAGTGACAACCGTCAAGGTACTGAGGAGGCCATGGGTGTGTGTAGGAAAAATGGATCTCCTTTGGTCAGCCTTGAGTACTCTACAGGATGGGACCCTTTGGCTGAGAGTAGAAATTTCAATGGGTATAGTCAAGATATGTTCCAGAGTTTGAGGTTCAATTTGGAAGAAGTGGAGTCTGCTACTCAGTATTTCTCAGAGTTGAATCTGTTGGGGAAGAATAGCTTCAGTGCAACATATAGAGGAGTTTTGAGAGATGGATCCGTTGTTGCTGTGAAGAGCATAAGTAAAACTAGTTGCAAGTCGGATGAAGCTGAGTTTATGAAGGGACTGAACATGTTGACCTCATTGAGGAATGATAATGTAGTTAGGTTGAGAGGATTCTGTTGTTCAAGGGGACGAGGTGAATGCTTTCTGATTTATGATTTTGTTTCCAATGGAAACCTTTCACGCTTCCTTGATGTTAAGGAAGGAGATGGTGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGGTTGCAAAAGGTATGGCATATTTACATGCATACAGAGCAAACAAACCAGTTTTGGTTCACCAAAACATCTCAGCTGACAGAGTCCTAATTGATCAGCGGTACAATGCATTGTTGGCAGATTCTGGCCTGTACAAGCTTCTTACTAATGATATTGTGTTCTCTGCACTGAAGGGTAGTGCAGCAAAGGGTTACCTGGCTCCTGAATATGCCACTACTGGGCGCCTTGCTCAGACAAGTGATGTCTATGCTTTTGGGGTGCTGCTTTTCCAGATCCTTTCTGGGAAGCAAGAAATCACTACCAGCTCAATAAGGCTTGCTGCAGAGTGCTCCAACTTCCAAGAATTTATGGACCCAAATCTTCATGGAAGATACTTTGAATATGAAGCAGCTAAACTGGCAAAAATAGCTTTGCTTTGCTCCCACGAGTCTCCTTTCGAGAGGCCATCCATGGAAGCCATTGTTCAAGAACTGGGAAACTGCAGTAGCTGCCTCTGA 2037 0.4389 MAFSVLLLLFSLAFLLSNPTWVRGNGELRALMDLKASLDPESLYLPSWTVNGDPCGGYFEGVACNEKGHVANISLQGKGLSGKLSPAIAGLKYLTGLYLHYNSLYGDIPREVANLTELVDLYLNVNNLSGEIPREIATMEHLQVLQLCYNHLTGSIPTQLGALKKLSVVALQSNQLTGAIPASLGDLGMLARLDLSSNNLFGSIPTSLAEAPSLRVFDVHNNTLSGNVPPALKRLEDGFLYEYNLGLCGVGFSSLKACNASDHVIPSRPEPYGAATRDIPETANVKLPCNGTQCLNSSKSNQSISITIVIFVVIIAMSAIGILTFTLYRRRKQKLGGSFHISDNRQGTEEAMGVCRKNGSPLVSLEYSTGWDPLAESRNFNGYSQDMFQSLRFNLEEVESATQYFSELNLLGKNSFSATYRGVLRDGSVVAVKSISKTSCKSDEAEFMKGLNMLTSLRNDNVVRLRGFCCSRGRGECFLIYDFVSNGNLSRFLDVKEGDGEVLEWSTRVSIVKGVAKGMAYLHAYRANKPVLVHQNISADRVLIDQRYNALLADSGLYKLLTNDIVFSALKGSAAKGYLAPEYATTGRLAQTSDVYAFGVLLFQILSGKQEITTSSIRLAAECSNFQEFMDPNLHGRYFEYEAAKLAKIALLCSHESPFERPSMEAIVQELGNCSSCL* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1709 678 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vra8g1709 678 ProSiteProfiles Protein kinase domain profile. 405 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1709 678 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 676 - -
Vra8g1709 678 Gene3D Transferase(Phosphotransferase) domain 1 484 677 - -
Vra8g1709 678 Gene3D Ribonuclease Inhibitor 139 251 IPR032675 -
Vra8g1709 678 Gene3D Phosphorylase Kinase; domain 1 374 483 - -
Vra8g1709 678 SUPERFAMILY L domain-like 27 234 - -
Vra8g1709 678 Pfam Protein tyrosine and serine/threonine kinase 409 671 IPR001245 GO:0004672|GO:0006468
Vra8g1709 678 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Vra8g1709 678 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 5 676 - -
Vra8g1709 678 Gene3D Ribonuclease Inhibitor 26 137 IPR032675 -
Vra8g1709 678 SUPERFAMILY Protein kinase-like (PK-like) 380 671 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1709 Vra-Chr8 34239657 34243013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1709 8 518 Miscellaneous Gene Families AT4G22730 55.429 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vra8g1709 PK_Tyr_Ser-Thr 1.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1709 - - gmx:100775422 1206.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0896 1 10404715 10408621 Vra8g1709 8 34239657 34243013 PCT