Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1699 ATGATGGTTGTGAGCGGAGGGAAGGGCCTCAAACGCGCCGCGAAGAAGAGAGTCACCGCCGATTTCTACGACTTCCTTACGTTCCCTTCGCCGTCCCTCGCCGAGACGGAGAACTTCGCCGGCGGTCCATTTCGTTCCAACGTTCGCTCCTTTCTGACGAAGCACGCGCTGCTTCCGCCGCCGTACGCGCTCTTCCCCCACTTGCTGACGTGGCAGATACTCTTCCGCGTTGGCGAGCTTACCGAAGGCCCCGACTCACCTGTTGTGTGCCTTGACGTTGTGGAAGAAGACGTCGCCAGATCCAGATCTGTTTACTGCGATCAGTGCCGTGTTTTCGGTTGGAGCGGTCATCCAGTGTGCGGGAAGCGATACCATTTTATAATCAAAGCCGATGGAAGCTCTATTGGTGGGTACCATAAGCCGTGTATGTGCTGTGGAGACATCCTACATTTGTCAGAATCCAAATGCAAGTCTTGCAATCACGTGACCACCACTGATGATGTTGAAGACTGGGTGTACCACCAATTAGAGAACACGACTCATCTTTTACACGGCGTAGTCCACGGCAATGGATATGGGCACCTTCTACGGGTTAATGGCAGAGAAGGGGGATCTAGATTTCTTTCTGGTTGTCATATTATGGATTTCTGGGATCGCCTATGCAACACTCTTGGAGTCAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATATGGCCTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGACACCCATGGTATGGTGACTGGGGTTACAGATTTGGCTCCGGTAGCTATTGTCTCACGCATGAGGCATACAAGTCTGCTGTTGAAAACCTATCCAACCTACCCTTGTCCAACTTTTCACAGGGACAGATGCCGGTACCTCATTCCCGTGTGCAGGACATGATAAAATATTTCCAGTCTTTGTCAGAGCATGAGCTTGTAAATATAAGAGACCTCTTTTGTTTCATAATGGGTTTGATTGGTGATGCTCGCAAGAGTGTATCAAATGTTGATGACACAGCCTGCAAGAAGCGTCGTTTTAATGCTTCTGGACTGTCAATTTCTTGGGAGAAGGCTGACATTGAACGTGTGGAGCAAGCTATGATCAGAGTGCTGCGTGCAGTGTCCGAGTCTAAGTGGGTAAACTGGCGTGCTCTTAGGGGTGCGGCCTGCAAGGTGGGCTCTCCAGAACTGCTTGATTATTGCCTGGGAGAACTGGGGGGGAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAAACTGGAGTTTATGAGTTCAGACTTGAGCCTGCCACTGGTGCTTGCTATGGAGTTTTAGCGAACAATAACTCTTCAGGCTCGAAGTATCCATCCGAAGAAAACCTCCTACAGTGCTTAAGATATTTATACGACTCTTTGCTTCATCCACAGATGATGGTAAACTATGTTGAAGCAGGGACGAGGACTCTAGCGATGAGCTCAGTTCAGAAGCTTTTTGACTGCAAGCAGTTTGTGAAAGATTATAGTCCCGAGTTGTTACCATTGTCAGATTTGCACAAATTACGCATCTCATGTCAGGTTGAAATCGTAGATGAATCTGAAGATCCAGAAGCCATAGCTCCAACGGAATTAATTGTGCTGCCCATGAACGCCACAGTGGCCGAGCTTAAAAGTCAAGCAGCGATTGCTTTTCAAGATGTATATCTAATGTTTAGAAGATTTCAAGTTGATGAGCTAGTAGGCTATAGCGGTGTTGAAGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGATGTAGTTTGTGTTCGAGGAAGATGCATTGGGAAAAATGGGTTAAGTAAGTTCCGGATGGAACGAGGACTTGAGAGGTGGACTGTAGATTGCAGCTGTGGGGCCAAGGATGACGATGGGGAGAGAATGTTGGCGTGCGATATATGTGGAGTGTGGCGGCACACTAGGTGTTCTGACATCCATGATACTGATCCTGTTCCAGCACGTTTTGTTTGCCTCAAGTGCCAAAACAATGAATCAAAACTCAAATCTGGTGGCCACTGCAAAGATGAGACTGTCACTAACGTTACCACTCCCACTAGTTGTTTCGGAAAAACCTTCCCAGTGCCATCTGATGTCAGTTAG 2139 0.4783 MMVVSGGKGLKRAAKKRVTADFYDFLTFPSPSLAETENFAGGPFRSNVRSFLTKHALLPPPYALFPHLLTWQILFRVGELTEGPDSPVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHGNGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCNTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYRFGSGSYCLTHEAYKSAVENLSNLPLSNFSQGQMPVPHSRVQDMIKYFQSLSEHELVNIRDLFCFIMGLIGDARKSVSNVDDTACKKRRFNASGLSISWEKADIERVEQAMIRVLRAVSESKWVNWRALRGAACKVGSPELLDYCLGELGGKMVYGGMVVNSRCNPQTGVYEFRLEPATGACYGVLANNNSSGSKYPSEENLLQCLRYLYDSLLHPQMMVNYVEAGTRTLAMSSVQKLFDCKQFVKDYSPELLPLSDLHKLRISCQVEIVDESEDPEAIAPTELIVLPMNATVAELKSQAAIAFQDVYLMFRRFQVDELVGYSGVEDSTQVKLLLGSKDVVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDTDPVPARFVCLKCQNNESKLKSGGHCKDETVTNVTTPTSCFGKTFPVPSDVS* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1699 712 Pfam PHD-finger 629 675 IPR019787 -
Vra8g1699 712 SMART PHD_3 628 674 IPR001965 -
Vra8g1699 712 CDD PHD_MMD1_like 628 673 - -
Vra8g1699 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 2 682 - -
Vra8g1699 712 PANTHER OS01G0877500 PROTEIN 2 682 - -
Vra8g1699 712 SUPERFAMILY FYVE/PHD zinc finger 617 676 IPR011011 -
Vra8g1699 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 680 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1699 Vra-Chr8 34174924 34180164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1699 79 673 PHD Transcription Factor Family AT5G22260 30.866 7.37e-87 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra8g1699 PHD 1.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1699 - - gmx:100818189 1333.55