Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1697 ATGGAGTCAAGCAATTTATATGCTGATCAAAGGGCAGACAAAAAAATAATAATAATAAGATACACGGAATGTCTGAAGAACCATGCAGCTTCAATTGGTGGCAATGCAACTGATGGTTGTGGCGAGTTCATTGCTGATGGAGAAGAAGGCACGCTTGAGGCTCTCATATGCTCGGCTTGCAACTGCCACAGAAACTTCCACAGAAAAGAGATAGAGTCTTCTGATTCCTATATCACTCCTCTGATGATTCTTCCTAACACTACTCAGATAGGGCCTATTTTGGCTCAGTTATCTCCCCACAAAAGTGGTTCAATTAGTCCTTCTGATGTGTCTGATGAGAAGGACTGTGAAAACGGGATTAGAAAGGAGGTGGGAAATAATGCAACTGAAAAGGTGAAGAAAAGGTTTAGAACCAAGTTCACACAAGAGCAAAAAGAGAAGATGTTTCTTTTTGCAGAAAGAGCAGGGTGGAGGATACAGAAGCTAGATGAATCTGTGGTGCAAAACTTTTGCCAGGAGATTGGAATCAAAAGAAGAGTCCTCAAAGTGTGGATTCACAATAACAAAAACACTTTTGCCAAGAGAAATCCCTTCACTAGCTAG 603 0.4113 MESSNLYADQRADKKIIIIRYTECLKNHAASIGGNATDGCGEFIADGEEGTLEALICSACNCHRNFHRKEIESSDSYITPLMILPNTTQIGPILAQLSPHKSGSISPSDVSDEKDCENGIRKEVGNNATEKVKKRFRTKFTQEQKEKMFLFAERAGWRIQKLDESVVQNFCQEIGIKRRVLKVWIHNNKNTFAKRNPFTS* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1697 200 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 20 71 IPR006456 -
Vra8g1697 200 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 70 IPR006456 -
Vra8g1697 200 SUPERFAMILY Homeodomain-like 127 194 IPR009057 -
Vra8g1697 200 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 133 190 IPR006455 -
Vra8g1697 200 Gene3D - 119 194 - -
Vra8g1697 200 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 195 - -
Vra8g1697 200 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 13 195 - -
Vra8g1697 200 Pfam ZF-HD protein dimerisation region 19 71 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1697 Vra-Chr8 34166755 34167689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1697 5 195 ZF-HD Transcription Factor Family AT2G02540 47.465 1.12e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra8g1697 ZF-HD_dimer 1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1697 - - gmx:100793926 320.472