Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1696 ATGGCTTCCAGGCGTTTGAGGGCATTCAATCGGTGGATGAAATCGAAGGGTTTCCAGTGGAGCGATGCATTGGAGTTTGTGGATACACCTGGCGAGGGAATATCGGTGAGAGCTTTGTGCCAATTGGAGGAAGGTGATGTTGTGGCCAAAATGCCAAAAGAAGCTTGCCTCACCACCAAGACTAGTGGGGCACGTGAGATCATTGAAGAGGCTGGTTTGGATGGTCATTTGGGGCTAGCATTTGCCATCATGTATGAGAGAAGCTTGGGTGAGGACTCACCTTGGTATGGATACCTTCAACTCTTGCCTCACCAAGAATGCGTGCCAATTGTTTGGACCCTCAATGAAGTAAACGAGCTTTTGTGTGGTACTGAGCTTCACCAGACTGTGCAAGAAGACAAGGCTCTGATTTACGAGGACTGGAAAGAGAATATTCTTCCCCTATTGGATTTGGCACCTTTAAAGCTAAACCCGAAATTCTTTGACATAGAACAATACTTTGCTGCAAAAAGTCTTATATCTTCTCGATCCTTTGAGATTGATGATTACCATGGTTTTGGCATGGTTCCCTTGGCAGATCTATTCAATCATAAAACAGGTGCTGAGGATGTGCATTTCACTGCTATGTCCTCTAATTATGAATCAGGTAGTGATGTGGATGGTAGTAATAATGATGAGGGCATTGTTAAGGAAGAAGTAGCATTGGCTCAAAATTCCTCTACAGATATGACTGCATCAATTGATGCTAATGTTGGGAACAACATTGATAGTGATTTGGAGAGTTCTTCAGTTAGCGAAGATGATACTTCTATGTTAGAGATGATTACGATAAAAAATGTCAGTAGTGGAACTGAGGTATTTAATACTTATGGGCTATTGGGTAATGCTGCTTTGCTCCATAGATATGGATTTACCGAGCAAGACAATTCCTATGATATTGTAAACATAGACATGGAGCTGGTACTTCAATGGTGTTCTTCAGCTTTTTCTGACCGCCACAGTAGAGCAAGAGTTTCCCTTTGGAGAAGGTTAGGCTATTCTGCATGTGGCAGCCAAGACTCCGAATATTTTGAGATCTCATTTGACGGAGAACCTCAAATTGAACTCCTCATTTTATTACACATCATGTTATTGCTAGATGATGCTTACCAAAAGTTAGACCTATCGGTATCAGTTGCTGGGAATTGTCCTGAATCAAATGGTGGAACTACCCATCTGAATGGTAATATCTTTCCTAACGAAGCATTTAATATGAGCAAGAAGTCCTTGCTGCCTAAAAGGGTTTGTGATGCCCTGTTGTCGCTAGCTGACATGAGGGAGAGTCTCTATGGTTTGAATTCAGTGGAAGATGATATTGAAGCATTGGAAAGGTGTAGTTTAGATAGAGAGAGGAAACTGTATCATTCTTTGGTGCTGCGCATCAATGAAAGGAAGATTCTTCAAAAGCTCAGAAATTATGCTTCGCAGCCATTTGAAATCAATAAGCATAGTTCACCTAGGAAGAAAATGAAAAGGACAACAGAGAAATCGGATTGA 1536 0.416 MASRRLRAFNRWMKSKGFQWSDALEFVDTPGEGISVRALCQLEEGDVVAKMPKEACLTTKTSGAREIIEEAGLDGHLGLAFAIMYERSLGEDSPWYGYLQLLPHQECVPIVWTLNEVNELLCGTELHQTVQEDKALIYEDWKENILPLLDLAPLKLNPKFFDIEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTAMSSNYESGSDVDGSNNDEGIVKEEVALAQNSSTDMTASIDANVGNNIDSDLESSSVSEDDTSMLEMITIKNVSSGTEVFNTYGLLGNAALLHRYGFTEQDNSYDIVNIDMELVLQWCSSAFSDRHSRARVSLWRRLGYSACGSQDSEYFEISFDGEPQIELLILLHIMLLLDDAYQKLDLSVSVAGNCPESNGGTTHLNGNIFPNEAFNMSKKSLLPKRVCDALLSLADMRESLYGLNSVEDDIEALERCSLDRERKLYHSLVLRINERKILQKLRNYASQPFEINKHSSPRKKMKRTTEKSD* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1696 511 Pfam SET domain 33 291 IPR001214 GO:0005515
Vra8g1696 511 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 494 - -
Vra8g1696 511 MobiDBLite consensus disorder prediction 491 511 - -
Vra8g1696 511 SUPERFAMILY SET domain 268 310 IPR046341 -
Vra8g1696 511 SUPERFAMILY SET domain 3 206 IPR046341 -
Vra8g1696 511 CDD SET_LSMT 23 305 - -
Vra8g1696 511 Gene3D - 307 497 IPR036464 -
Vra8g1696 511 PIRSF RMS1_SET 1 490 IPR011383 GO:0016279|GO:0018026
Vra8g1696 511 ProSiteProfiles SET domain profile. 22 291 IPR001214 GO:0005515
Vra8g1696 511 PANTHER RIBOSOMAL LYSINE N-METHYLTRANSFERASE 3 6 494 - -
Vra8g1696 511 Gene3D set domain protein methyltransferase, domain 1 2 304 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1696 2 503 NAC Transcription Factor Family AT3G56570 54.237 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra8g1696 SET 3.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1696 K05302 - vra:106769924 993.03