Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1685 ATGGCAACAACAAGAAGATATGAGTTTGGAATGAATGAGAGTAGCCGCCCAGACTCTATCAGAGCCGCCATAGCTGAATTCATCTCCACTTGCATCTTTGTCTTTGTTGGAGAAGGCTCAGTCCTTGCTTTGAATCAAATTTACAAGGAACCTGGGTCATCAGCAGCTGAGCTGGTGGTAATTGCAGTGGCTCATGCCTTTGCTCTATTTGCTGCTATTGCTGCTAGTGCACATGTTTCTGGTGGACACGTGAACCCTGCTGTCACTTTTGGTGCTCTTCTTGGTGGAAGGATATCCGTCCTTAAAGCCATTTACTACTGGGTTGCTCAAATCCTTGGTTCTATTGTTGCTGCTCTCTTGTTGAGACTTGTCACTAACAACATGAGACCAGAGGGGTTCAGTTTATCAGTTGGGGTTGGAGCGGTTCATGGTCTTATACTTGAAATTTGCCTCACATTTGGTCTGATGTACACTGTGTATGCCACTGCTATGGATCCTAAAAGGGGTACAATTAGCACAATTGCACCCTTAGCCATTGGACTGGTGGTAGGAGCAAACATCCTGGCTGGTGGACCTTTTGATGGAGCATGCATGAACCCTGCTCGGGCTTTTGGGCCTGCATTGGTGGGCTGGAGGTGGCAGAACCACTGGATCTTCTGGGTGGGCCCATTACTTGGGGCAGCCCTAGCAGCAGTCCTGTATGAATTCGTTGTTATCCCAATTGAGCCTCCTCCTCATCAACCTTTGCCTGCTGAAGAGTATTAG 765 0.4797 MATTRRYEFGMNESSRPDSIRAAIAEFISTCIFVFVGEGSVLALNQIYKEPGSSAAELVVIAVAHAFALFAAIAASAHVSGGHVNPAVTFGALLGGRISVLKAIYYWVAQILGSIVAALLLRLVTNNMRPEGFSLSVGVGAVHGLILEICLTFGLMYTVYATAMDPKRGTISTIAPLAIGLVVGANILAGGPFDGACMNPARAFGPALVGWRWQNHWIFWVGPLLGAALAAVLYEFVVIPIEPPPHQPLPAEEY* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1685 254 PANTHER AQUAPORIN-8 4 254 IPR034294 -
Vra8g1685 254 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Vra8g1685 254 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g1685 254 Gene3D Glycerol uptake facilitator protein. 9 242 IPR023271 -
Vra8g1685 254 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g1685 254 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g1685 254 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vra8g1685 254 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 4 254 - -
Vra8g1685 254 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g1685 254 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g1685 254 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g1685 254 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g1685 254 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g1685 254 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1685 Vra-Chr8 33990350 33991891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1685 1 254 Major Intrinsic Protein MIP AT1G73190 62.687 7.78e-113 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1685 K09873 - gmx:100814469 373.629