Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1679 ATGCCAATCACAATGTCTCTCACTCTAAGGAATAAGCTCAAGACTCTTTGTTCTTCTGTTGATGCTTGGTCTTATGCTATTTTCTGGCGCTTTCATCCGCGCAATTCCTTGTTGTTGACTGTGGAAGAAGCATACTATGAAGAGCATCTGGGAGAAGAGATCGCCGACATGCATCCACAGGTCCACTTGCTGGGTGAAGGAATTGTAGGTGAAGCTGCTTTCACGGGTAAACACAGTTGGGTGCACTCAGATGGTCAAACTCATTATTGGAATCCGACTGGGCAAAATATTTGTGAAGATGATTCTTGTATGCATCAACAGTTTTCCTCCGGAATAAAGACTATTGTGGTCATACCTGTCAAAGCATTAGGAGTGGTACAGTTTGGATCCAGAAATAAGATTTTGGAGAGAGTGGAATTTTTGGAGCAAACACAAAGCATGCTCACAGAAATAGATGATGATATGGGTATGTTTGACATGTCAGAAAATGCAGTTTTACCATTGGACTGTGAAAATAATGATTTAAATGGGATGTTGGCTTCCATTTCTTCTGCTAGTCCCAACGACCCTTTCCCTTCTCATTATAAAAACTACGAAGAAGCATTGGCTTCATTTCAAGGAGATTCTTCGTATCTTGGTGACCAATTGAAAGGTACCACGGAAGCACAAGTTGTATGGTCAGATAGGAATAGCATTGATGTGCTTTTGAAGCCTAACTCTTCTACGGACAACTTCATTGCCAAAACCCCCTATCTTGGTGTGTGTGATGGTGAATTATCTTCTTTTGATTTGTTGGAGCAACTACTGGTTTCCAGTGTAAGGCCACAAGATGTTGCTGATGCGTGTTTAATGAATGGAAATGCATCTTCTACCAGCAAACTTCCATTCTGCAGTATGGACAGAGGGTCATTTCAAGGAAAATTGCAAAATTCACTGGATAACCAATATTCAAATCAGTCTAGTGTTGTGACAGACGTTGATTTTTCTTCTACTTCATATGCATTGCATGGACACTCTGAGAGCATAGAGCCAGTTGATATGTCAGAAGAAATTTTGAAGTTCAGCTCCATGGATGATCTTTGCCACTGGTTTGGTCCTTCTTCAGAGGATAGCATCTGCAAAGCAGCAATTATGGATAACAAATTTTCTGAATCAACAGAATTTAATCCCACTTCCTTTGATCTGGTTGGAAGTAGTTCTTTAAATGATGTTTTAGTGACAGGCCTAGCTGGGTATAATTCAAACTCAGATGGGAATGAAACATCTGTGGTTATGCAGAACACTGAAAAAGGTCCGTTGGATTTCATGGAAATTGATTTTAGCTATGAACAAGCCAATGAATGGTGGGGGAATACACTTACACCAGTGGTGAGTGGTGTTACTGATACTGGCTTTTCTGAAAGCATATCAGAGTTGATTTCTGATACTCTGCCAGGCACCCGGAAGAGATTATTCTCAGAGTTGGGAATTGAAGAGCTTTTGAGGGGTGGAGCAAATTACTATCCAGTCAATAGTTCGGAATTTGATTGTGGATTATCACCCAATAAGAGGCAGACAGTAGAATGTTCATCTGTGAATGGAAGTACAAGAGCAGAACTGATGCAACCTCTTTGTGACTTAGACAGCACAAACAATCTTCCAAGCAAGAAAGATACATTCTCAAAATTACAAGCAGCAACTTGGATTGATGATAGCCATAGCATTAACATTAGAAAGGCTGTTCCAAAACACCCTCAAAAGCCAGAGGAACATGCAAAGCCCACCAAGAAGAGGGCTAGACCTGGAGAGAGCCCTCGACCACGGCCAAAAGATCGTCAGCAAATCCAAGACTGTATTAAAGAATTGAGAGGAATCATCCCAAATGGTGGAAAGTGTAGCATTGATTCTTTGTTAGACCTCACCATCAGATATATGCTTTTCTTACAAAGTGTTCTCAAGTATTCAGACAAGCTACGAGAACCAAATGAGCCGAAGCTTATTGAACAGGAAAATGAAGTGGTTCTAAAAGACAGTGATGTGGCGGATAGCAAAAACTGTGGCATTACGTGGGCATATGAAGTGGGACATGAAACAATGCTATGCCCCATTATAGTTGAAGACATGAGTCCACCAGGCCAAATGCTTATAGAGATGCTTTGTGAGGTGCAGGGTATATTCCTTGAGATCATTGACATAATTCGGGGTTTTGGACTGAATATATTGAAAGCTAAGATGGAAAGAAAGAAGAACAAACTATGGGCACGCTTTATCGTTGAGGCAAACAGACATGTGACAAGGATAGATGTGTTTTGGTCCCTTATCCATCTTCTACAACAGACAAACACCTCCGGCATTGATTCTTCCAACAAGAATTGGGATGCTCTTCATGCCAATAGCATCAAATCCTAG 2388 0.4095 MPITMSLTLRNKLKTLCSSVDAWSYAIFWRFHPRNSLLLTVEEAYYEEHLGEEIADMHPQVHLLGEGIVGEAAFTGKHSWVHSDGQTHYWNPTGQNICEDDSCMHQQFSSGIKTIVVIPVKALGVVQFGSRNKILERVEFLEQTQSMLTEIDDDMGMFDMSENAVLPLDCENNDLNGMLASISSASPNDPFPSHYKNYEEALASFQGDSSYLGDQLKGTTEAQVVWSDRNSIDVLLKPNSSTDNFIAKTPYLGVCDGELSSFDLLEQLLVSSVRPQDVADACLMNGNASSTSKLPFCSMDRGSFQGKLQNSLDNQYSNQSSVVTDVDFSSTSYALHGHSESIEPVDMSEEILKFSSMDDLCHWFGPSSEDSICKAAIMDNKFSESTEFNPTSFDLVGSSSLNDVLVTGLAGYNSNSDGNETSVVMQNTEKGPLDFMEIDFSYEQANEWWGNTLTPVVSGVTDTGFSESISELISDTLPGTRKRLFSELGIEELLRGGANYYPVNSSEFDCGLSPNKRQTVECSSVNGSTRAELMQPLCDLDSTNNLPSKKDTFSKLQAATWIDDSHSINIRKAVPKHPQKPEEHAKPTKKRARPGESPRPRPKDRQQIQDCIKELRGIIPNGGKCSIDSLLDLTIRYMLFLQSVLKYSDKLREPNEPKLIEQENEVVLKDSDVADSKNCGITWAYEVGHETMLCPIIVEDMSPPGQMLIEMLCEVQGIFLEIIDIIRGFGLNILKAKMERKKNKLWARFIVEANRHVTRIDVFWSLIHLLQQTNTSGIDSSNKNWDALHANSIKS* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1679 795 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 57 147 IPR025610 -
Vra8g1679 795 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 48 IPR025610 -
Vra8g1679 795 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 5 788 IPR043561 GO:0003700|GO:0006355
Vra8g1679 795 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 592 641 IPR011598 GO:0046983
Vra8g1679 795 MobiDBLite consensus disorder prediction 570 607 - -
Vra8g1679 795 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN-RELATED 5 788 - -
Vra8g1679 795 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 605 656 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1679 Vra-Chr8 33901017 33905597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1679 557 780 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 50.000 3.32e-66 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1679 - - vun:114190585 1405.58