Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1669 ATGAAAGGGGGGCGATCGCATCGCCCTCAGAGCTCTGACCCACCGGATGAGTGGGTGGACGGGTCGTGGACGGTGGATTGTATCTGCGGCGTGACCTTCGATGACGGCGAGGAGATGGTGAAGTGCGACGAGTGCGGCGTGTGGGTCCACACGCGCTGCTCGCGGTACGTGAAGGGCGACGACACCTTCGCCTGCGACAAGTGCAAGGCCAGGCACAACAACAACCCGGAGGAGACCGAGGTGGCACAGTTCCTCGTGGAACTCCCCACCAAAACCATCTCCATGGACAACAAAAAGGCCCTACCCTCTCGGCCCAGGCTCTGGACTGATAAGCCCATCCAGGAGCGGGTCCACGTCCAGGGCCCACCTGGAGGCGACCCTTCCATCTTTTCGGCCACCTCCGTGTCCTCGATTTTCTCCCCTCACCTCTGGAAGGCCTGCGGGTACGTTCCCAAGAAGTTTAATTTCCAGTACAAGGAGTTTCCCTTCTGGAGCGATAACGATGATGATATGGATAACGTTAACGAGAGTTTACAAGCACAAACAGAAGCTCAACCACAGGCACAAGATAATAACAAAAACGGGGCTGGGGCTCTTGTTTATTTGTCTAAAGACGGTGATAATAATGGTGCGGCTCTTGTATTGGACCCTTCCTCTGTTGATGCGAGATCTGGTCACGCGAAGGAAACCGAAACGGGCAAGTTTGGAAGCGAGGATGTGCCGCCTCGTGTCCGCAGTGAGGTGAAGAAGGAGAGGACTCTGCTGAGACCTCCTGTTGTTCATAACAGTAAGCGCAGCAAAGGGGATTTCAGGTCTTCAAATTCGAAAGACCGGAGCGGGAAGAAGCGGGTTAGGACTACTTCTGACAGAGAGGTGGATCCCATGAGGAGAACTCTGCATTCTTCTAAATCAGTATTTACAACCACCGGTGATGCAAAACAAGTGGACTTTTATGAGGACAGAGGACCAAAGATTTTAAAGGCTGACACTAGGAGCATAAAGAATAAAAACTTAAAAGAGACAGTTGTTCAAGAATGTGTTTCTGATGATTATTTGGCTGTTGATACCATCATGGAGGAGCCAAATAATAACATAGCAACTACGGAGGACTCTTCAGAACCATTATATCCTGACACGACTAGACATGGTGTTTCTGTTGTAGACGTTCCAGCAGAAGAGAAGCCTAATCATAAACCTCCTACTGTGGTGGAGATGTCTTCTAAGACTGATGATGCTGTTACATCGGCTTTAAAGCAGAATAATGTTGGAAATGCTTCAGCTAAAGAAAAGGATGGGGATTGCTCAGTAGCTGATAATGCAGATGATAGTTTAGTAGCCAGAAGTGCTGCAAGTCCTCACACAGAAGGTTATTGCGGTTCTGCACCAGAACTTGCAGATAACCAATTTTCTCAAGATCTTGAACGCAACAAGCGTACAAGCTCTACAAAATGCAAAGTTAAGATGAAGAGGGAAGACGACATTGATAATTTTAAGAAGCCCTCAATTTTTCATCCTTCTCCTATCAGTGATCTTAAAAACAATGAAAAACTATCTGATCACAAATCTGATGTTGAAGTGAATGATGCACCAGTTCCTAGTTTACCATCATGTGAAAATAAGGTCGGCAGTGTTGACATTTCATCAGAAGTAATCCCTGCTGATTATATCAATAAGCCCAATGAATTATCTGGTGATATTTGTCCTAGAAAGCAAGAACTGGAGGGTTATGAAGGTTCCTTGGAAACACAAAAGGTATTTTCTGAAATCAAAGATGGTTCAGATTCTGCTAAAGATCCTTCAAGATCTGAAGCACTTGGATGTCCAGCTAAAGTGCTAGCATGTGTTGGAAAGTCATCTCCAACTTCGTCAACCATGAACTCCAAATCATTGGGTCATCATGATATCAAATCTGAAGATACCGAAACAGCTAATCCTTTTACAAAGCATGGAGCGATGACTGATTCTAGTGTTCAGATAAAGAATGAAAACTGTACAAGTAATGTTGCCAGGGATGACAATCCAAAGAAGTCTGTAAGAGAGCGACCAAAATCCTCCTTGAATTCCAATTCAAAGGGATTGCATTCAAGCAGGAGTGTGCATAATTCTGTCTCCAAGCAAGCAAACTCAGATGTGAGGGATTCCGTTTCAGTATCTTCCAAGTCTTTGATACATCAGACTGCAAGTATATCAGGCTCTAGTGAGTCCAATGTATCATTGCACAATCAGAAGGTTCAAGTGCAGAATAAGATTTCATCTTCAGCACCACAGAAAGTTGAAAAAGTTAACCAAACAAACATTGCCACTTCCTCTAAGTTGAACCAAGGTCATGTGCCATCAACGAATCCTTCTCCAATATCAAATTCTTCAATGTTGAGTGATGAAGAGCTCGCTCTGCTACTGCACCAAGAACTGAATAGTTCACCCCGTGTACCCCGTGTACCCCGAGCACGCCATGCAGGTAGCTTGCCCCAGCTTAGTTCTGCTAGTGCTACAAGCATGCTAATGAAGCGAACATCAGGTGGAGGAAAGGATCATTATTTGGTATCTAGACGAAAACACAAGGATGCATCTAGAGATGGGTCTGGCAGTTCTCGTGATCTGGAAGATGAAGCTAAAAAGGTAGAGAAGGAGAAGGGTCCAACCTCTTCTGATCAGAGGAAACAAGATATGTCATATATGGAGGATGCTCCTGCGAGGGAAGAAGGCCCTGCATCTATGACAGCAGCAAACTCAATCGCAAAAAACATTGTTTCTTCCACGTCTGCAATAGCAAACAGTGATCCTTCCTCCCCTCCAGAGGATCAGAATCTATCATCCATGCGAAACTCACCTAGGAATATCTCTGATGATGATACAGCGACTGCTGGAAGGCCAGCTCATCACACCTTACCTGGTTTAATCAATGAAATTATTATGAGCAAAGGCAGGCGCATGACATATGAGGAACTCTGTAGTGCTGTGCTACCGCACTGGCATAACTTGAGGAAACACAATGGAGAGCGTTACGCATACTCAAGTCACTCCCAGGCTGTTCTTGATTGTTTGAGGAACCGGCAAGAATGGGCAAGGTTGGTTGATCGTGGTCCAAAGCTTGGTTACTTGATACAGGTCTTGCTCCACTGA 3123 0.4569 MKGGRSHRPQSSDPPDEWVDGSWTVDCICGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDDTFACDKCKARHNNNPEETEVAQFLVELPTKTISMDNKKALPSRPRLWTDKPIQERVHVQGPPGGDPSIFSATSVSSIFSPHLWKACGYVPKKFNFQYKEFPFWSDNDDDMDNVNESLQAQTEAQPQAQDNNKNGAGALVYLSKDGDNNGAALVLDPSSVDARSGHAKETETGKFGSEDVPPRVRSEVKKERTLLRPPVVHNSKRSKGDFRSSNSKDRSGKKRVRTTSDREVDPMRRTLHSSKSVFTTTGDAKQVDFYEDRGPKILKADTRSIKNKNLKETVVQECVSDDYLAVDTIMEEPNNNIATTEDSSEPLYPDTTRHGVSVVDVPAEEKPNHKPPTVVEMSSKTDDAVTSALKQNNVGNASAKEKDGDCSVADNADDSLVARSAASPHTEGYCGSAPELADNQFSQDLERNKRTSSTKCKVKMKREDDIDNFKKPSIFHPSPISDLKNNEKLSDHKSDVEVNDAPVPSLPSCENKVGSVDISSEVIPADYINKPNELSGDICPRKQELEGYEGSLETQKVFSEIKDGSDSAKDPSRSEALGCPAKVLACVGKSSPTSSTMNSKSLGHHDIKSEDTETANPFTKHGAMTDSSVQIKNENCTSNVARDDNPKKSVRERPKSSLNSNSKGLHSSRSVHNSVSKQANSDVRDSVSVSSKSLIHQTASISGSSESNVSLHNQKVQVQNKISSSAPQKVEKVNQTNIATSSKLNQGHVPSTNPSPISNSSMLSDEELALLLHQELNSSPRVPRVPRARHAGSLPQLSSASATSMLMKRTSGGGKDHYLVSRRKHKDASRDGSGSSRDLEDEAKKVEKEKGPTSSDQRKQDMSYMEDAPAREEGPASMTAANSIAKNIVSSTSAIANSDPSSPPEDQNLSSMRNSPRNISDDDTATAGRPAHHTLPGLINEIIMSKGRRMTYEELCSAVLPHWHNLRKHNGERYAYSSHSQAVLDCLRNRQEWARLVDRGPKLGYLIQVLLH* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1669 1040 PANTHER UNCHARACTERIZED 1 1030 - -
Vra8g1669 1040 MobiDBLite consensus disorder prediction 616 630 - -
Vra8g1669 1040 MobiDBLite consensus disorder prediction 497 540 - -
Vra8g1669 1040 MobiDBLite consensus disorder prediction 767 788 - -
Vra8g1669 1040 MobiDBLite consensus disorder prediction 921 961 - -
Vra8g1669 1040 MobiDBLite consensus disorder prediction 222 292 - -
Vra8g1669 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 76 IPR013083 -
Vra8g1669 1040 SMART PHD_3 26 69 IPR001965 -
Vra8g1669 1040 MobiDBLite consensus disorder prediction 843 896 - -
Vra8g1669 1040 MobiDBLite consensus disorder prediction 181 196 - -
Vra8g1669 1040 MobiDBLite consensus disorder prediction 181 292 - -
Vra8g1669 1040 MobiDBLite consensus disorder prediction 807 905 - -
Vra8g1669 1040 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SET-26-RELATED 1 1030 - -
Vra8g1669 1040 ProSitePatterns Zinc finger PHD-type signature. 27 68 IPR019786 -
Vra8g1669 1040 MobiDBLite consensus disorder prediction 391 411 - -
Vra8g1669 1040 MobiDBLite consensus disorder prediction 644 671 - -
Vra8g1669 1040 MobiDBLite consensus disorder prediction 616 717 - -
Vra8g1669 1040 SUPERFAMILY FYVE/PHD zinc finger 15 73 IPR011011 -
Vra8g1669 1040 MobiDBLite consensus disorder prediction 921 950 - -
Vra8g1669 1040 MobiDBLite consensus disorder prediction 683 717 - -
Vra8g1669 1040 MobiDBLite consensus disorder prediction 822 836 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1669 25 68 PHD Transcription Factor Family AT5G22260 44.681 3.07e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1669 - - gmx:100810855 1579.69