Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1664 ATGATGGGGACTGAGCTTATGAGAATATGTGTTAAAGAAGACAATGATGATTTTCCATCAGTTCCGCCAGGTTTTGAGTCATATACATCTTTCTCTCTGAAGAGGGTAGAAAACAATGAAAAACAAGATGATAAAAACATGATCAGTTGTTCAGCCTCAACAAGTGCTTCTGAATCACCATCAACTCAGGTGGAAAATGATGTTCAAGTTCCTGAAACTGCAAAGGTTCCTAGATCCCTTCGAAGAAGACCATGGATTAATTATGGACAATATGAGAACCATTCAGAAGAAGACTCTGACTGTGAGCGGCATGATCAAACTTTGTCCTCTAGGGCTTGTCTTCCTCGAGGAGTCATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGACCTGAAGATGCTCGTAGGCCAAATATTGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAGTTTCGAGATACTTTGAAATATATATCAAGCATTCGCTCCAGGGCTGAGCCATATGGAATTTGCCGCATTGTTCCACCTTCTTCTTGGAAACCCCCCTGTCCTCTCAAGGAAAAAAGTAAATGGGAGGGTTCTAAATTTTCTACACGTGTACAGAGGATTGACAAACTTCAGAATCGTGATTCAATGAGAAAAATGTCAAGGGTTCAAAGTAATATGAAGAGGAAAAGGAGAAGATGCACAAGAATGGGGGTGGATAATGGCACTAGAAGAGGACCCAATACAGCATTTTGTGAAGTGGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATATGCAGAAGATTTTCAGCTCCAATACTTCAGAAAAAATGAGAATGTATCTCATTTGGGTGGTAATACAACAATTTTAAATGGTACCTCAGAGCCTTCTGTGGAGAGCATTGAAGGTGAATATTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGTGCTGATCTGGAAACTGGGATTTTTGGGAGTGGTTTCCCTAGTAAATCTAGTCAGCTAGGTTCTGCTTCACATGAACAATACATAAAGTCTGGCTGGAATTTAAATAACTTTGCAAGGCTTCCTGGATCTCTGCTCTCTTATGAGAGCAGTGATATATCTGGTGTTTTAGTGCCGTGGTTGTACATTGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAAGACCACCATTTATATTCATTGAACTACATGCATTGGGGAGCTCCAAAATTGTGGTATGGAGTCCCTGGAAGAGATGCCTGCAAATTAGAAGAGGCTATGAGAAAGCAGTTACCAGAACTTTTTGAAGAACAGCCTGACTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCTTCTATCCTTAAGTCTAAAGGAGTACCAGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGCGGTTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGAGTTGTACCAGGAACAGGGGCGCAAGACTTCTATATCACATGATAAGCTGTTGCTTGGGGCTGCAAGGGAAGCAGTTCGAGCTCAATGGGAGCTTAATTTGCTAAAGAAGAATACTTTGGATAATCTACGATGGAAGGATGTCTGTGGAAAGGATGGCTTTTTGGCCAAAGCACTTAAGATGCGTGTTGAGATGGAACGAGCACGAAGAGAATATCTCTGCAGTTCTCTACAGGCATTAAAAATGGAGAGTACCTTTGACGCTACGGATGAAAGGGAATGTAACATATGCTTTTTTGATTTACACCTATCTGCAGCTGGCTGTCGCTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCAAAGCAGCTTTGTTCATGCTCTTGGGATTCCAGATTTTTTCTCTTTCGGTATGATGTTACTGAACTAAATATTCTGGTGGAGGCATTGGAAGGAAAATTAAGTGCAATCTACAGATGGGCAAAATCAGATCTTGGGCTGGCGCTATCATCTGATGTTTCATCAGGCAAGGAAACAATACTTAAAGAATTGAAATCACATTCATCCAGTTTGTCTCATTCTTCCAGGGCCACTTTGAATAATAAAGAGATGGCTTTGCATCCACCGAATAAATATATTGATGATTCTCAATTGATTGACGTCCCAATAGAGAATCAAGCAAATAGCAAAGATCAGAGCTATTTTCAACAGAGAAAATCAGCTGAAGCTATTTCATTTTTGAGTTCAACGAAGGACTTGCTAACATTTAACAGCTCAAAACCTACATCTGATATTCCTAATCATAAGATCTGTGTTAGTAAGGAAGAATCTGTCATTTGCAGCTCAAAGATGAAAACACCTGGTTGTCAATTGTCTCGGGAGGATACATCGTATGCTTTATCTACTCTAGCTCAACAAGGAGGTGAGAAAAGTTCACTTTACAGGCATAACAACGTTATACTTCTTAGTGACGATGAAGAAGACGAGAAGATGTCTGATTCAAATAGAAGGAAGGAACTTTCTTCTATGCTTGTACGTCCTGGAGATAAGTCAAGCCCATTTAACAATATAGAAAGTACAAACTTGACCATTTCTGTGACAGATACTGCTGTGATGGGTGAAAGGGATGCTATGACATTACCCCATGAAAATACGAGTTCTGATTCAATTCCGTCTGTGCGTGTGAAACAAGAATGTCATGAATACACAGGAACAGTTCCAGCCTCTACCCCACTAGACCTTTCTTGTCATATTGGTCTTCCAAGTGCACAATGTGCTAAAAATATTTCAGCTCCATCAAAAGTAGAAGCAAGTGATCATTGTTTGGAAAGTTTGGAGATGTCTCCTCTGAACCTACAACTGTCTGGCACTAAGGTTAAGACTGAAGATAATCACGAAAAATTTGGAGGATGTTCCACTTCTAATGTAGCAGACAATGCGAGAGCTGTTAATGGGAACTTTTCTTGCGGTCCAAACAATTTCCGACAGAAAGGTCCTCGGATAGCGAAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCATTAGAATTTGGGGTTGTGCTTTCTGGAAAGTCTTGGTGTAGCAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGAGTTAGATACATAAATGTCTCAGATCCATCCAGTATGTGTTACTATATTTCAGAAATACTTGATGCTGGACGTGGTTGGCCTCTATTTATGGTTTCCTTAGAAAGTTGTCCAAGTGAGGTCTTCATCCATATGTCAGCCGCAAGATGCTGGGAGCTCGTCAGAGAGAAAGTGAATCAAGAAATTGCCAAGCAACATAAGCTGGGAAGAAAGGGCCTTCCTCCTTTACAGCCCCCGGGTAGCCTTGATGGCTTAGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAGGCTATTGAGGCGCTGGATCGAAGTCGAGTGTGTAATGAATATTGGGACTCACGGCCGTACTCCCGTCCTTTAGGACAGATTTCACAATCATGCCAAAGCAGTGTTAGTGGTGGCATTGGTCAAGGTGGTGACATTCCCGTTGATGTTGTTGCAGTATTAAGGAGCCTATGTAAAAAGGCTAATGCAGAAGAATTGAACTCGTTGTACAGCATTCTTAGTGAAAGTAGGCCACAGGCTGACAGGAGCCAAATTGCGCAATTTCTTAAAGAAGAGATTCACAAATCACAACCACCCTAG 3762 0.4195 MMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVENNEKQDDKNMISCSASTSASESPSTQVENDVQVPETAKVPRSLRRRPWINYGQYENHSEEDSDCERHDQTLSSRACLPRGVIRGCPDCSNCQKVVARWRPEDARRPNIEDAPVFYPTEEEFRDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKSKWEGSKFSTRVQRIDKLQNRDSMRKMSRVQSNMKRKRRRCTRMGVDNGTRRGPNTAFCEVERFGFEPGPEFTLETFQRYAEDFQLQYFRKNENVSHLGGNTTILNGTSEPSVESIEGEYWRMVESPTEEIEVLYGADLETGIFGSGFPSKSSQLGSASHEQYIKSGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGRDACKLEEAMRKQLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYQEQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTLDNLRWKDVCGKDGFLAKALKMRVEMERARREYLCSSLQALKMESTFDATDERECNICFFDLHLSAAGCRCSPDRYACLDHAKQLCSCSWDSRFFLFRYDVTELNILVEALEGKLSAIYRWAKSDLGLALSSDVSSGKETILKELKSHSSSLSHSSRATLNNKEMALHPPNKYIDDSQLIDVPIENQANSKDQSYFQQRKSAEAISFLSSTKDLLTFNSSKPTSDIPNHKICVSKEESVICSSKMKTPGCQLSREDTSYALSTLAQQGGEKSSLYRHNNVILLSDDEEDEKMSDSNRRKELSSMLVRPGDKSSPFNNIESTNLTISVTDTAVMGERDAMTLPHENTSSDSIPSVRVKQECHEYTGTVPASTPLDLSCHIGLPSAQCAKNISAPSKVEASDHCLESLEMSPLNLQLSGTKVKTEDNHEKFGGCSTSNVADNARAVNGNFSCGPNNFRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINVSDPSSMCYYISEILDAGRGWPLFMVSLESCPSEVFIHMSAARCWELVREKVNQEIAKQHKLGRKGLPPLQPPGSLDGLEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPYSRPLGQISQSCQSSVSGGIGQGGDIPVDVVAVLRSLCKKANAEELNSLYSILSESRPQADRSQIAQFLKEEIHKSQPP* 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1664 1253 Pfam jmjN domain 149 182 IPR003349 -
Vra8g1664 1253 MobiDBLite consensus disorder prediction 45 69 - -
Vra8g1664 1253 Pfam F/Y rich C-terminus 1086 1169 IPR003889 GO:0005634
Vra8g1664 1253 ProSiteProfiles FYR domain FYRC motif profile. 1083 1173 IPR003889 GO:0005634
Vra8g1664 1253 SMART cupin_9 360 523 IPR003347 -
Vra8g1664 1253 Gene3D Cupin 133 507 - -
Vra8g1664 1253 Gene3D - 1030 1167 - -
Vra8g1664 1253 MobiDBLite consensus disorder prediction 844 863 - -
Vra8g1664 1253 MobiDBLite consensus disorder prediction 36 75 - -
Vra8g1664 1253 Pfam C5HC2 zinc finger 613 663 IPR004198 -
Vra8g1664 1253 SMART fyrn_3 1037 1081 IPR003888 GO:0005634
Vra8g1664 1253 ProSiteProfiles JmjC domain profile. 360 523 IPR003347 -
Vra8g1664 1253 ProSiteProfiles JmjN domain profile. 148 189 IPR003349 -
Vra8g1664 1253 SUPERFAMILY Clavaminate synthase-like 358 550 - -
Vra8g1664 1253 Pfam F/Y-rich N-terminus 1036 1078 IPR003888 GO:0005634
Vra8g1664 1253 Pfam JmjC domain, hydroxylase 390 506 IPR003347 -
Vra8g1664 1253 SMART fyrc_3 1087 1181 IPR003889 GO:0005634
Vra8g1664 1253 MobiDBLite consensus disorder prediction 844 876 - -
Vra8g1664 1253 ProSiteProfiles FYR domain FYRN motif profile. 1023 1081 IPR003888 GO:0005634
Vra8g1664 1253 PANTHER JUMONJI 14-RELATED 1007 1250 - -
Vra8g1664 1253 PANTHER JUMONJI 14-RELATED 74 783 - -
Vra8g1664 1253 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1007 1250 - -
Vra8g1664 1253 PANTHER LYSINE-SPECIFIC DEMETHYLASE 74 783 - -
Vra8g1664 1253 SMART JmjN_1 147 188 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1664 Vra-Chr8 33709594 33720308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1664 2 1248 JUMONJI Transcription Factor Family AT1G08620 55.234 0.0 1258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra8g1664 JmjC 1.1e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1664 - - gmx:100800271 2206.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1664 8 33709594 33720308 Vra8g1664 8 33709594 33720308 ECH