Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1657 ATGGAGGAAGTGGAGATAACAGAGGAAGAAGACGAAGTTGTGGTTGCTCCAACTAACTTTTCAATGGTGGAAGAGGGTATTTTTCGCAGCAGTTTCCCTCGATCTTCGAATTTCTCTTTTCTTGAAACTCTGAATCTTCGTTCCGTCGTATATTTGTGCCCTGAACCCTATCCACAGCAAAATCTACAGTTTCTTCAATCACAAAATATCAAGTTCTTCCACTTTGGTATTGAAGGCAAAACGGATCTTTCTGTGCCTGCCGTTAAGGATTTGATCTTGGAGGCCGTCAAAGTTTTGATTGACGTGAGAAATCACCCAGTTCTAGTCCACTGTAATCAAGGAAAGCATCGAACTGGCTGTGTTGTTGGATGCTTCAGAAAACTGCAGAGTTGGTGTTTATCTTCTGTGTTTGAGGAGTACAAGAAATTTGCTGGTGCTAAATCCAGAACAACTGATTTAAGTTTCATAGAAACGGTTGATCTCTTAAACCTGAGAAAGTGTCTTAACAGCATCATATACCAATACCTAGGATATTCTTCAAAGAAACGCAAGTTGCTGTACAGAGATGATAATTCACTCAAGTTCCACTTGACATCAGTTTAG 603 0.4013 MEEVEITEEEDEVVVAPTNFSMVEEGIFRSSFPRSSNFSFLETLNLRSVVYLCPEPYPQQNLQFLQSQNIKFFHFGIEGKTDLSVPAVKDLILEAVKVLIDVRNHPVLVHCNQGKHRTGCVVGCFRKLQSWCLSSVFEEYKKFAGAKSRTTDLSFIETVDLLNLRKCLNSIIYQYLGYSSKKRKLLYRDDNSLKFHLTSV* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1657 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 9 183 - -
Vra8g1657 200 Pfam Tyrosine phosphatase family 14 160 IPR004861 -
Vra8g1657 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 168 IPR020422 GO:0006470|GO:0008138
Vra8g1657 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 9 183 - -
Vra8g1657 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 157 IPR029021 -
Vra8g1657 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311|GO:0016791
Vra8g1657 200 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791
Vra8g1657 200 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791
Vra8g1657 200 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791
Vra8g1657 200 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Vra8g1657 200 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 90 122 IPR000387 GO:0016311|GO:0016791
Vra8g1657 200 Gene3D Protein tyrosine phosphatase superfamily 14 162 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1657 Vra-Chr8 33601683 33602751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1657 4 191 Protein tyrosine phosphatase (PTP) family AT3G02800 62.234 7.99e-94 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1657 K18045 - gmx:100808199 336.265