Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1656 ATGGAGAAGAAGAAGCTCAACGTCATCATCCCTAATCCTCAACCTCATGGAATCATTCCACGCCGCAATTCCCCTATCTCTCAAGGACAAGATTCACTGTGGATGATGAATTTGAGGAGTGGCGAAACAATGGATTCTGGAGCTTATCCGGAGCGTCCAGGGGAGCCAGACTGTTCATATTACATCAGAACTGGACTCTGTAGATTTGGTGCAACGTGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCTACTGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGACAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGCGCCACATGCAAATTTCATCATCCTAAAGATCAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATACTTTAGGCTATCCGCTCCGACCTAATGATCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGAAACACTTGCAAATTCCACCATCCTCAACCGAGTAATATGATGCTTTCATTACAGGATTCTTCTGTTTACCCTACTGTCCATTCTCCAACTACACCAGGTCAGCAGTCGTATGCAGGAGGAATTACAAATTGGTCAAGGGCACCATACATCCCTAGTCCTCGCTGGCAGGTTCCTTCTAGTTATGCACCCTTAATTCTTCCTCAGGGAGTGGTTTCGGTGCCTGGGTGGAGTGCATATGGTGGTCAAGTGGGATCAATCTCTACTTCAGACAGTCATCAGCAAGCAATGAGAAATGGTCAAACATATGGAACTTCTCGCCAAGGTGAGCTAGCAAACGCAGGATCACATGGAGCATATTCTCAATTCCGTTCTGGCACTGTTCCAGTAGGGTTTTATGCATTGCAGAGGGAAAACATATTTCCTGAGAGACCTGGCCAGCCTGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTTTGGCGCAGTCTGTCGGTTCCACCACCCAAGCGAAAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATGGGCCTTCCTTTACGTCCGGGAGAACCTTTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAATTTTCACCTATAATATCTCTTCATCGCCTTCAGCTGATGCCCCGAGCAGGCATCTGCTACGATCTTCATCAGGAACTGCTGCGTTAAATTTATCTTCGGAAGGACTTGGTGAATCGAGCTCAGCAACACCCAGACGGCTTTCGTTATCAGAGACAAGACAGATACCATCTGGTGATGATGACATTGATGATGATGGATGA 1335 0.4599 MEKKKLNVIIPNPQPHGIIPRRNSPISQGQDSLWMMNLRSGETMDSGAYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPKDQAGIAGRVALNTLGYPLRPNDPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLQDSSVYPTVHSPTTPGQQSYAGGITNWSRAPYIPSPRWQVPSSYAPLILPQGVVSVPGWSAYGGQVGSISTSDSHQQAMRNGQTYGTSRQGELANAGSHGAYSQFRSGTVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPSERLIPAPDCVLSPMGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISSSPSADAPSRHLLRSSSGTAALNLSSEGLGESSSATPRRLSLSETRQIPSGDDDIDDDG* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1656 444 PANTHER PROTEIN PHOSPHATASE RELATED 25 443 - -
Vra8g1656 444 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 25 443 - -
Vra8g1656 444 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Vra8g1656 444 Gene3D - 50 131 - -
Vra8g1656 444 Gene3D - 304 387 - -
Vra8g1656 444 SUPERFAMILY CCCH zinc finger 101 126 IPR036855 GO:0046872
Vra8g1656 444 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Vra8g1656 444 SUPERFAMILY CCCH zinc finger 57 80 IPR036855 GO:0046872
Vra8g1656 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 79 IPR000571 GO:0046872
Vra8g1656 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 330 IPR000571 GO:0046872
Vra8g1656 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 377 IPR000571 GO:0046872
Vra8g1656 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 124 IPR000571 GO:0046872
Vra8g1656 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 147 170 IPR000571 GO:0046872
Vra8g1656 444 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Vra8g1656 444 MobiDBLite consensus disorder prediction 408 433 - -
Vra8g1656 444 Gene3D - 132 180 - -
Vra8g1656 444 SMART c3hfinal6 52 79 IPR000571 GO:0046872
Vra8g1656 444 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Vra8g1656 444 SMART c3hfinal6 97 124 IPR000571 GO:0046872
Vra8g1656 444 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Vra8g1656 444 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Vra8g1656 444 ProSiteProfiles Zinc finger C3H1-type profile. 97 125 IPR000571 GO:0046872
Vra8g1656 444 SUPERFAMILY CCCH zinc finger 308 333 IPR036855 GO:0046872
Vra8g1656 444 SUPERFAMILY CCCH zinc finger 353 377 IPR036855 GO:0046872
Vra8g1656 444 SUPERFAMILY CCCH zinc finger 147 171 IPR036855 GO:0046872
Vra8g1656 444 MobiDBLite consensus disorder prediction 408 444 - -
Vra8g1656 444 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1656 Vra-Chr8 33592959 33598380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1656 33 443 C2H2 Transcription Factor Family AT3G02830 60.000 5.37e-173 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra8g1656 zf-CCCH 5.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1656 - - ccaj:109816515 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1656 8 33592959 33598380 Vra8g1656 8 33592959 33598380 ECH