Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra8g1652 | ATGTTCAAATTCTTGAAAGAGGTGGTGGCTGGATCTGGCACCGGCCTCAAAGATCTTCCATACAATATCGGTGAACCTTACGCTTCTGCTTGGGGCTCGTGGCTTCACTTTCGCGGCACCTCCAAGGATGATGGTTCTCCAGTGTCAATATTTTCTCTGTCTGGGAGCAATGCTCAGGATGGACATTTAGCTGCGGGTCGTAATGGTGTTAAGCGTCTACGCACTGTTAGGCATCCGAATATTTTATCTTTTCTTCACAGCACTGAGGTTGAAACTGTTGATGCTGGTTCTCCCAAGGTTACAATTTATATGGTGACCGAGCCTGTGATGCCGCTGTCAGACAAGATTAAGGAGCTAGGTCTTGAAGGTACCCAAAGGGATGAATATTATGCTTGGGGCCTGCATCAAATAGCAAAGGCTGTGAGCTTCTTAAATAACGATTGTAAACTCGTTCATGCTTATGTTTGCTTGGCAAGTGTTGTTGTCACACAAACTTTGGACTGGAAACTCCATGCTTTTGATGTTCTGTCCGAGTTTGATGGGAATAACGAAGCTTCCTCTGGGCAAATGCTGCAATATGCCTGGCTTGTTGGAGCACAGTACAAACCAATGGAACTGGCAAAATCTGACTGGGCTGGAATTAAGAAGTCTCCTCCGTGGGCAATTGATTCTTGGGGCATGGGTTGTCTTATCTATGAGCTGTTCTCTGGTTTAAAGTTGGGCAAAACAGAGGAGTTACGCAACACTGTCTTCATTCCTAAGTCTCTGCTTCCAGATTACCAGCGGTTGCTGAGTTCTACACCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGCGAGTATTTTCAAAATAAATTAGTAGACACGATTCATTTCATGGAAATTCTTAGTTTGAAAGATAGTGTTGAGAAAGACACTTTCTTCCGCAAGCTTCCAAATTTGTCAGAGCAACTTCCTCAGCAGATTGTGTTGAAAAAGTTGCTTCCTTTATTAGCTTCTGCTCTTGAATATGGTTCAGCATCTGCCCCTGCTTTGACTGCATTGTTGAAAATGGGTTCTGCACTGTCATCTGAGGAGTTCTGTGTGAAGGTGCTTCCAACCCTTGTTAAGCTTTTTTCATCAAATGATCGAGCTATTCGAGTTGGACTTCTACAACATATTAATCAGTATGGGGAGTCATTATCAGCACAAGTTGTTGATGAGCAGGTTTACCCTCATGTTGCTACTGGGTTCTCTGATACATCCGCTTTTCTGAGGGAACTTACTCTCAAGTCAATGCTAATTCTGGCTCCAAAGCTGTCTCAAAGGACCTTTTCTGGGTCATTATTAAAGCATTTGTCAAAGTTACAGGTCGATGAAGAACCAGCTATACGAACAAATACTACCATCTTGTTGGGAAACATTGCAAACTATTTAAACGAAGGGACAAGAAAAAGAGTGTTGATTAATGCATTTACAGTCCGTGCTTTACGTGATACCTTTCCACCTGCTAGAGGAGCAGGCATTATGGCTTTATGTGCTACCAGTTCCTACTATGACATCACTGAAATTGCAACTCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAATGATGTGCGATCTAAGGCATTTCAGGCTGTTGATCAATTTTTGCAGATGGCGAAGCAATATTACGAAAAGACAAATACAGCAGAGGCTACTGAGGGAACTAGCATGGGGATCTCTTCAATTCCTGAAAATGCTGGTTTACTTGGATGGGCTATGAGTTCCTTGACTCTGAAGGGTAAACCTTCTGATCATGCTCCCGTGTCTTCTGTGAGTTCTACGGCACTTACTCCAGCACCTGCTAATGCCAGCTCGGATACTCCTCCAACAGCCCCTCTTCGTGTAAGGTCTGCGCCAGATTTTGCTGAGCAACCTGTCCCCACTTCCCCAACATCAACAGACGGCTGGGGGGAAATGGAAAATGGACTTGACGAGGAGTGTGAAAATGACAAGGATGGGTGGGATGATCTGGAACCACTTGAAGAAACCAAACCAACTCCAGCTCTTGCAAACATTCAAGCAGCTCAAAGGCGGCCGGTTTCGCAACCTGTTTCGCAGACAAAGCTAGCGACGAGTTTGCAATCGAAAAGTACATCAAAGTTGAGAAAGGATGAAGATGATGATTTGTGGGGTTCCATAGCAGCTCCTGCTCCAAAAACATCAAAATCTTTAAATTTGAAATCAAGTGTAACTGATGATGATGATCCTTGGGCTGCCATCGCTGCTCCTGCTCCCACTACTAAGGCCAAGCCCTTGTCAGCTGGCAGAGGGCGGAGTGCTAAACCTGCTGCTCCAAAGTTAGGTGCTCAGCGGCTAAACCGGACATCGTCCGGCACCTAA | 2382 | 0.4458 | MFKFLKEVVAGSGTGLKDLPYNIGEPYASAWGSWLHFRGTSKDDGSPVSIFSLSGSNAQDGHLAAGRNGVKRLRTVRHPNILSFLHSTEVETVDAGSPKVTIYMVTEPVMPLSDKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHAYVCLASVVVTQTLDWKLHAFDVLSEFDGNNEASSGQMLQYAWLVGAQYKPMELAKSDWAGIKKSPPWAIDSWGMGCLIYELFSGLKLGKTEELRNTVFIPKSLLPDYQRLLSSTPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLSEQLPQQIVLKKLLPLLASALEYGSASAPALTALLKMGSALSSEEFCVKVLPTLVKLFSSNDRAIRVGLLQHINQYGESLSAQVVDEQVYPHVATGFSDTSAFLRELTLKSMLILAPKLSQRTFSGSLLKHLSKLQVDEEPAIRTNTTILLGNIANYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEIATRILPNVVVLTIDPDNDVRSKAFQAVDQFLQMAKQYYEKTNTAEATEGTSMGISSIPENAGLLGWAMSSLTLKGKPSDHAPVSSVSSTALTPAPANASSDTPPTAPLRVRSAPDFAEQPVPTSPTSTDGWGEMENGLDEECENDKDGWDDLEPLEETKPTPALANIQAAQRRPVSQPVSQTKLATSLQSKSTSKLRKDEDDDLWGSIAAPAPKTSKSLNLKSSVTDDDDPWAAIAAPAPTTKAKPLSAGRGRSAKPAAPKLGAQRLNRTSSGT* | 794 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra8g1652 | 793 | MobiDBLite | consensus disorder prediction | 688 | 793 | - | - | |
| Vra8g1652 | 793 | MobiDBLite | consensus disorder prediction | 653 | 670 | - | - | |
| Vra8g1652 | 793 | PANTHER | - | 1 | 791 | - | - | |
| Vra8g1652 | 793 | SUPERFAMILY | ARM repeat | 293 | 551 | IPR016024 | - | |
| Vra8g1652 | 793 | MobiDBLite | consensus disorder prediction | 689 | 711 | - | - | |
| Vra8g1652 | 793 | Gene3D | - | 282 | 561 | IPR011989 | - | |
| Vra8g1652 | 793 | MobiDBLite | consensus disorder prediction | 594 | 675 | - | - | |
| Vra8g1652 | 793 | ProSiteProfiles | HEAT repeat profile. | 366 | 404 | IPR021133 | - | |
| Vra8g1652 | 793 | SUPERFAMILY | Protein kinase-like (PK-like) | 37 | 287 | IPR011009 | - | |
| Vra8g1652 | 793 | Gene3D | Phosphorylase Kinase; domain 1 | 12 | 107 | - | - | |
| Vra8g1652 | 793 | PANTHER | SCY1-RELATED S/T PROTEIN KINASE-LIKE | 1 | 791 | - | - | |
| Vra8g1652 | 793 | ProSiteProfiles | Protein kinase domain profile. | 2 | 284 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vra8g1652 | 793 | MobiDBLite | consensus disorder prediction | 600 | 625 | - | - | |
| Vra8g1652 | 793 | Gene3D | Transferase(Phosphotransferase) domain 1 | 109 | 274 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra8g1652 | Vra-Chr8 | 33555384 | 33570699 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | SCY1_SCYL1 | Vra8g1652 | None | None | None |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra8g1652 | K08876 | - | gmx:100792884 | 1368.21 |