Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1641 ATGGCCAACACGGAGGCGGAGCTGAAGCAAAATTTAAAGGAATTGATCGAAAGTATCGTTGACGGTAATGATTACACCGTTCAGACTGCGGACAATGCTATCCGTGCTCTTTCTGCGCTCAAAGATTTGAAGCGCGTTCCGGTCAATGCTTCTCCCTCAACAAACGTGGATCAATCACCCATTCCTTCACACTTTCGATGCCCTCTCTCCGGTCACTTGATGACAGATCCTGTTATCTTGATCGTTGGACAGACTTTTGATCGTCCATTAATCCAGAGATGGCTGAATGATATCCGCGGAGTTTACCCTCAGAGCCATGTTGTTCTCAATCGCAGTATTCTCGCTCCCAATACCTTGCTCCTAAGCATGATTTCAGAGTGGTGCAAAGACAACGGAATTGACATGCCAAAGCCTGTTTCTGAAGTTCACGACGAACAACTAACCGAGGCACTCATACACCGTTTGCATTCTCTGCTCTTGAAGCTGTCACTGTCACTCCCTGAGCAGAAAGAAGCTGCAAAGGAGCTTCGTCAGTTAGCAAAAAGAATGTCCGTTCGAGCACTCTTTGGGACTACACAAATGATTAACATTTTGTTGCGTCCGTTATCATCCGAAGCTCCTACGGATCCTGAACTCCAAGATGATTTGGTCGCAGTTATTCTAAACCTCTCAATACTCGACTCGAACAAGAGGTTGTTGGCAGAAAACGAAAATGTCATTGCCTTTCTCATTGATTCGTTGAAATCCGGAGCAATTGAAACAAGAAGCAATGCAGCTGCAGCTCTTTCCTCGATGTCATCTCTTGATTCGAACAAGCACATAATTGGAAGATCTGGAGCTATAAAGTACTTAGTGGATTTACTTGAAGAGGGAGACCCATTAGCCATGAGAGAGGCTGGAACAGCCTTGTTCAAACTATGGTTTGTTCGTGAAAATATAGCGAGGACCGTTCGAGAAGGGGCAGTGCAGATTATGCTTGGGAAGCTCGTCGACCATATTCTTGTTGATGAGTTGTTAACAATGTTGACACTTCTTGCTACACATAGTAAAGCAGTTGAAGCGTTGGTGAATCATGGCGGTGTCCGTTTCTTGCTTGATATCTTGAAGGAGGACACAGCAGAACGCACCAAGGAAAACGCTGCAGTAATTCTACAACTAATCTGTTACCATAATAGAGAAAAAAGGGAGGAAATTAAAGAGGAAGAACTGGCCAACGGCACAATCTCAAAGGTTGTTCAAAACGGCTCCGCCAGGGCTAGAAGGAAAGCTAACTCCATCCTCAATCTACTTTGTATTAATCCAAATCCAAGTCCAAATCCAGATCCAAACCCAAACCCAAATCCGTGA 1347 0.4469 MANTEAELKQNLKELIESIVDGNDYTVQTADNAIRALSALKDLKRVPVNASPSTNVDQSPIPSHFRCPLSGHLMTDPVILIVGQTFDRPLIQRWLNDIRGVYPQSHVVLNRSILAPNTLLLSMISEWCKDNGIDMPKPVSEVHDEQLTEALIHRLHSLLLKLSLSLPEQKEAAKELRQLAKRMSVRALFGTTQMINILLRPLSSEAPTDPELQDDLVAVILNLSILDSNKRLLAENENVIAFLIDSLKSGAIETRSNAAAALSSMSSLDSNKHIIGRSGAIKYLVDLLEEGDPLAMREAGTALFKLWFVRENIARTVREGAVQIMLGKLVDHILVDELLTMLTLLATHSKAVEALVNHGGVRFLLDILKEDTAERTKENAAVILQLICYHNREKREEIKEEELANGTISKVVQNGSARARRKANSILNLLCINPNPSPNPDPNPNPNP* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1641 448 SMART Ubox_2 64 127 IPR003613 GO:0004842|GO:0016567
Vra8g1641 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 135 IPR013083 -
Vra8g1641 448 PANTHER U BOX DOMAIN-CONTAINING 3 430 - -
Vra8g1641 448 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 3 430 - -
Vra8g1641 448 SUPERFAMILY RING/U-box 50 138 - -
Vra8g1641 448 Gene3D - 203 334 IPR011989 -
Vra8g1641 448 Pfam U-box domain 61 131 IPR003613 GO:0004842|GO:0016567
Vra8g1641 448 SMART arm_5 268 308 IPR000225 GO:0005515
Vra8g1641 448 SMART arm_5 348 389 IPR000225 GO:0005515
Vra8g1641 448 SMART arm_5 227 267 IPR000225 GO:0005515
Vra8g1641 448 Gene3D - 335 430 IPR011989 -
Vra8g1641 448 SUPERFAMILY ARM repeat 12 434 IPR016024 -
Vra8g1641 448 ProSiteProfiles U-box domain profile. 60 134 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1641 Vra-Chr8 33477708 33479484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1641 123 430 U-box Gene Family AT3G07360 49.842 6.12e-89 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1641 - - gmx:100806132 455.292