Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1624 ATGGCCAACACGGAGGAGGAGCTAAAGCAAAATTTAAAGGAACTGATCGAAAGTATCGTTGACGGTGATGATTACACCGTTCAGACTGCGGACAATGCTATCCGTGCTCTTTCTGCGCTCAAAGTTTTGAAGCGCCCCGCTTCTCCCGTTCCTCCACACTTTCGATGCCCTCTCTCCGGTCACTTGATGACAGATCCTGTTATCTTGGCCACTGGACAGACTTTTGATCGTCCATTAATCCAGAGATGGCTGAATGATATCCTCCGACTTTACCCTGAGAGCCATGTTGTTCTCAATCGCTGTTTGCTCTCTCCCAATGTCTTGCTTCAAGGCATGATTTCAGAGTGGTGCAAAGACAAGGGAATTTACCTGCCAAAGCCCGTTTTTAACGTTCACGACGAACAACTAACCGAGGCACTAAGACACCGTTTGCATCCTCTGCTCTTCAAGCTGTCACTGTCAGTCTCTGAGCAGAAAGAAGCTGCAAAGGAGCTTCGTCAGTTAGCAAAAACAATGTCCGTTCGAGCACTCTTTGGGACCAGACAAATGATTCAGCTTTTGTTGCGTCCGTTATCATCCGAAGCTCCTCTGGACCCTGAACTCCAATATGATTTGATCGCAGCTATTCTGAACCTCTCAATACTCGACTCGAACAAGAGGTTGTTGGCAGAAAACGAAAAACTCATTGCCTTTCTCATTGATTCGTTGAAATCCGGAGCAGTTCAAACAAGAAGCATTGCAGCTGCAGCTCTTTCCTCGATGTCATCTCTTGATTCGAACAAGCAAATAATTGGAAGGTCTGGAGCTATAAAGTACTTGGTGGATTTACTTGAAGAGGGAGACCCATTAGCCATGATAGATGCTGGATCAGCCTTGTTCAGACTATGCTGTGCTCGTGAAAATATAGTGAGGACCGTGCGAGAAGGGGTAGTGCAGATTATTCTTGGGAAGCTCGTCAACCATATTCTTGTTGATGATCTTGTTGATGAGTTGGTATCAATATTGGCACTTCTTGCTACACATACTATAGCAGTTGAAGCGTTGGTGAATCATGGCGGTGTCCGTTTCTTGCTTGATATCTTGAGGAAGACCACAGTAGAACGCGTCAAGGAAAACGCTGCAGTAATTCTACATCTAATCTGTTACCATAATAGAGAAAAAAGGGAGGAAATTAAAGAGGAAGAACTGGCCAACCGCACAATCTCAAATGTTGTTCAAAACGGGTCCGAGACGGCTAGAAGGAAAGCTAAATCCATCCTTGACTGTCTTCGTATAGGTAAGCCCACTTCTCAGAACAATCCAAATCCAAATCCAAATCCAGATCCAAACCCAAACCCAAATCCGTGA 1347 0.4514 MANTEEELKQNLKELIESIVDGDDYTVQTADNAIRALSALKVLKRPASPVPPHFRCPLSGHLMTDPVILATGQTFDRPLIQRWLNDILRLYPESHVVLNRCLLSPNVLLQGMISEWCKDKGIYLPKPVFNVHDEQLTEALRHRLHPLLFKLSLSVSEQKEAAKELRQLAKTMSVRALFGTRQMIQLLLRPLSSEAPLDPELQYDLIAAILNLSILDSNKRLLAENEKLIAFLIDSLKSGAVQTRSIAAAALSSMSSLDSNKQIIGRSGAIKYLVDLLEEGDPLAMIDAGSALFRLCCARENIVRTVREGVVQIILGKLVNHILVDDLVDELVSILALLATHTIAVEALVNHGGVRFLLDILRKTTVERVKENAAVILHLICYHNREKREEIKEEELANRTISNVVQNGSETARRKAKSILDCLRIGKPTSQNNPNPNPNPDPNPNPNP* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1624 448 SUPERFAMILY ARM repeat 152 423 IPR016024 -
Vra8g1624 448 SMART Ubox_2 53 116 IPR003613 GO:0004842|GO:0016567
Vra8g1624 448 ProSiteProfiles U-box domain profile. 49 123 IPR003613 GO:0004842|GO:0016567
Vra8g1624 448 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 4 425 - -
Vra8g1624 448 PANTHER U BOX DOMAIN-CONTAINING 4 425 - -
Vra8g1624 448 MobiDBLite consensus disorder prediction 424 448 - -
Vra8g1624 448 Gene3D - 320 433 IPR011989 -
Vra8g1624 448 Gene3D - 132 319 IPR011989 -
Vra8g1624 448 MobiDBLite consensus disorder prediction 433 448 - -
Vra8g1624 448 Pfam U-box domain 50 120 IPR003613 GO:0004842|GO:0016567
Vra8g1624 448 SUPERFAMILY RING/U-box 46 126 - -
Vra8g1624 448 SMART arm_5 257 297 IPR000225 GO:0005515
Vra8g1624 448 SMART arm_5 216 256 IPR000225 GO:0005515
Vra8g1624 448 SMART arm_5 341 382 IPR000225 GO:0005515
Vra8g1624 448 SMART arm_5 132 170 IPR000225 GO:0005515
Vra8g1624 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 123 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1624 Vra-Chr8 33337455 33339403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1624 112 424 U-box Gene Family AT3G07360 48.447 4.39e-81 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1624 - - gmx:100806132 458.373