Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1622 ATGGACGAAGCACTTCTTAACGACATAATCAATCGCCTTCTCGAAGTTCGTGGCCGACCGGGGAAGCAGGTGCAGCTGTCGGAGTCCGAGATCCGCCAGCTCTGTACCGCTTCCAGAGATATTTTCTTGCAACAACCTAATTTATTGGAGCTCGAAGCACCGATTAAGATTTGCGGTGATGTACACGGTCAATATTCTGATCTTTTAAGGCTTTTTGAATATGGTGGATTACCTCCTGAGGCTAACTACTTATTTTTGGGGGATTATGTGGATAGAGGGAAGCAGAGTTTGGAAACAATATGCCTTCTCCTAGCGTATAAAATAAAATATCCTGAGAACTTTTTTCTTTTGAGGGGTAACCATGAATGTGCATCTATTAACCGTATATATGGATTTTATGACGAGTGTAAAAGAAGGTTCAACGTAAGGTTATGGAAGACATTTACCGAATGCTTCAATTGCCTGCCTGTGGCAGCACTCATTGATGAAAAAATATTGTGCATGCATGGGGGCCTTTCTCCTGATTTGCATAATTTGGATCAAATTAGAAATCTACTACGGCCCACTGATGTGCCTGATACAGGTTTGCTTTGTGATCTCCTCTGGTCAGATCCAAGCAAAGAGGTTCAAGGTTGGGGAATGAATGATAGGGGAGTTTCATATACATTTGGTGCTGATAAGGTTTCGGAGTTTCTTCAGAAACATGATTTGGATCTTATTTGTCGTGCTCATCAGGTGGTTGAGGATGGGTATGAGTTCTTTGCTAACCGACAGCTTGTAACAATATTTTCGGCACCTAATTATTGTGGGGAGTTTGACAATGCTGGTGCTATGATGAGTGTTGATGAGACACTAATGTGCTCTTTCCAAATATTGAAGCCAGCTGATAAAAAAGCAAAGCTCAACAGTACTACCACTACTAAGCCAGGAAACTCCCCAGCAGGTGTAAAGTCTTTCATGGGTACAAGAGTATGA 975 0.4205 MDEALLNDIINRLLEVRGRPGKQVQLSESEIRQLCTASRDIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTECFNCLPVAALIDEKILCMHGGLSPDLHNLDQIRNLLRPTDVPDTGLLCDLLWSDPSKEVQGWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKAKLNSTTTTKPGNSPAGVKSFMGTRV* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1622 324 CDD MPP_PP1_PPKL 6 294 - -
Vra8g1622 324 SMART pp2a_7 26 296 IPR006186 GO:0016787
Vra8g1622 324 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 318 - -
Vra8g1622 324 SUPERFAMILY Metallo-dependent phosphatases 17 300 IPR029052 -
Vra8g1622 324 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Vra8g1622 324 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 318 - -
Vra8g1622 324 MobiDBLite consensus disorder prediction 300 324 - -
Vra8g1622 324 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Vra8g1622 324 Gene3D - 1 305 IPR029052 -
Vra8g1622 324 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Vra8g1622 324 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Vra8g1622 324 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Vra8g1622 324 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Vra8g1622 324 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Vra8g1622 324 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Vra8g1622 324 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Vra8g1622 324 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1622 Vra-Chr8 33319830 33329233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1622 55 239 Calmodulin-binding Proteins AT5G63870 31.818 7.97e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1622 K06269 - gmx:100799218 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1622 8 33319830 33329233 Vra8g1622 8 33319830 33329233 ECH