Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1607 ATGGAGGGGAAAACTGAGGATGAAGTGGTGGATATTGAGAGTGCTTCCAGTGGTTCTTTCAATGACGATTCAGATGATGACGAATCTTTGGTTCCCGAAATAGATGATGGAGTGCATCTTGAGGAGCCGTTAACAGAAGAGGAAATCCAAGATCTTATTTCTGAGTTGTTAGAAGTTGAGAGTAAGGCTGCAGAGGCGCAAGAAGCTCTTGAAGAGGAGTCTCTTTCTAAAGTGGAGAGTGAAGTTAGACAAGAACTCAAGCAAAGTCTTCAGGGGGATGATTTGGAAACTGCTGTTGATAATGAGATGGCTACTTTTAAAGAAGAATGGGAAGCTGTTCTGGATGACCTTGAAACCGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGCATTGAACTTCCCAGCCTTTTTAAGTTGATTGAAAAAGAAGCTCCCAATGTCTGCTCCACCGAAGCGTGGAAAAAGAGGAATCACTGGGTTGGCTCTGTTGCAACTTCAGATATTGCTGAGTCAATTGCTGATGCCGAGAAGCATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAATTACTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAACTTTGTGATGAAACCCAGGAACCAGTGAAAAATGAAACTGAGGGTGATTGGGATATGTTCAATAAAATAGTTTCTGATGGGAGCGGCATTGATGCTTCATTTGGCAGTAAGCACTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCAGCCTTGATGGGACTGAAATTTCCTGGAGTTGATGAGGTTGAGGAGATTGATGATGTTGATGGCAATTCTACGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAACTAGATCTTTCTGATGAGCAAAGGAGACAATTTAAAAAGGTCAAAGAAGAAGATGATGCAATTGTTGATAAAAAACTTCAAATCCGTTTGAAACATAGGAGGCATAAAAAGATAAGTAAACAGCGAGAAATGAGCACACCTATCCTGTTGACAGACAGCCCTACACAAAAGCCTTCATATGCTGATCATTTAGACCTTGATACAAAAGAAGGAACTAATGATAATGGGAAAATAGTCTCTGACAATGGCAATGATACATGTGTTCTTATCAAGACTGATAATATTAAAGGTTTGGATGCCAGTCATCATCTTGACAAAAAAAAGCTTACAAGTAGTGATGGTTTGTCAGATCCACCCAAATCCTCAGGGGACGGAGTTATTGAACAGAGAGGAATCAAACGTGCAAGCGTTGGTGAGCTTGATGCTGAAAATAAAAAATCTCGGCTTGTTGTTATTGATAGTGATGATGAAGCAGGGGTCACTAAGGAGAAATTAGATTGCAATACTCAAGACGTCAAAGATGAATTAGGTAACAATGGTACTGGTTCTCTTCCTTCAGAGTGTCTGGATGAAAAATTTTTGTGCACCGTTTGTGATAAAGTCGCTCTTGAAGTGCATCCACACCCTCTCTTGAAAGTAATTACTTGTGGAGATTGCAACCGCTTATTAAAAGAAAAGGCACATGAAAAGGATCTGGGACAGGATTGTTCGGAGGGTTACTGTACATGGTGTGGAGGAAACAGTGGATTAGTTAGTTGTAAATTGTGCAATATTTTATTCTGCACCAAGTGTTTAAAGAAGAATATTGGTGTAGAATTGGTTTCTGAAACTCAGGCCACTAGCTGGCATTGTTGTTGTTGTCATCCAAATCTTTTGCAAAGACTGTCCTTGCAACTAGAGAAAGCTGTGGGGTCTGCTCGTATAGTAGTTTCTAGTTCTAGTAGTGATTCAGATGATTCAGACGATTCAGATGAATCAGACGATTCAGATTATTCAGATGCTAAGATTAATGTTACAATGAGCTCCAAGCGAAGACCCAAAAAGAAGATTCGTAGAATACTTGATGATGCTGAATTAGGAGAAGAGACAAAAAGGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGAGAGGACAGTTTTCTGTTTCGTCAATTGAGATGAGCCCTGACGGATGTAATGGGAATTTATCAGAAGGTGCAAGTGTTGAAGTTCTTGGTGATGCTCTAGCAGGTTACATTGTGAATGTTGTGAGGGAAAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATTTCAGCTAAACTGAAGGCGCATCAGATATCTGGAATAAGATTCATGTGGGAAAATATCATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTTTAGCTCATACCATGGGCCTTGGTAAAACATTTCAGGTCATAGCTTTTTTGTACACTGCAATGCGATGTGTTGATCTGGGGTTAAGAACTGCACTTATAGTCACACCTGTTAACGTGCTACATAATTGGCGGCAAGAGTTCATTAAGTGGAGACCTTCTGAGTTAAAGCCACTCAGAGTCTTTATGCTGGAAGATGTACCAAGGGATAGAAGGGCGGAATTGCTTAAAAAATGGAGAGCTAAAGGTGGTGTCTTTTTGATTGGTTATAGTGCTTTCCGAAATTTGTCTTTTGGGAAGCATGTGAAAGATCGGAACATGGCCAGAGAAATTTGCCATGCTTTGCAGGATGGTCCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTAACGCAAGCCTTGAAGCAAGTAAAGTGCCAGAGAAGAATTGCGCTTACTGGGTCGCCCCTTCAAAACAATGTCATGGAGTATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAACCGCTTCCAAAATCCTATAGAGAATGGACAACACACCAATTCAACTCTGACAGATGTGAAAATTATGAACCAGAGGTCTCATATCCTCTATGAAGAATTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTGGCGAAGAAGGATCTACCACCCAAAACTGTCTTTGTGATAACTGTCAAGCTATCTCCCTTGCAGAGAAAATTGTATAAGAGATTCCTTGATGTGCACGGGTTCACTACCCAGGAGCATCCTGAATTGTTAAGGAAGAGATGTTTTTTTGCTGGGTACCAGGCATTAGCACGGATATGGAACCACCCTGGGATCTTGCAGTTGACAAAAGAAGCCAAGGATTATGCAAAAGAAGAGGATGCCGTTGAGAATTTTCTTGTGGATGATAGTTCAAGTGACGAAAATTCTGATTATAACGTTCTTGCTGGAGAGAAGATGGGGTTTGCAAACGACTTACTGCAAAGGAAAGATGGTAATGGCTTTTTCCTGAAGGGTTGGTGGAATGACCTTCTTCATGGTAAAATATATAAAGAGATCGATCACAGTGGCAAAATGGTTTTGCTGATGGAGATACTAACTATGAGTTCTGATGTTGGTGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATTGAACTTTATCTCTCAAGGATACCTCGACGTGGAAAACGAGGAAAGCTTTGGAAGAAGGGGAAAGATTGGTATAGGTTGGATGGTAGAACAGCGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTAAATAAGAGGGTAAAGTGTACTCTGATTTCAACTAGAGCTGGCTCCTTGGGTATAAATCTCCATGCAGCTAATCGTGTTGTCATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATCTATCGATCATGGAGGTATGGGCAGACAAAGCCTGTATTTGCTTATCGATTGCTAGCTCATGGAACTATGGAAGAGAAGATATACAAGCGCCAGGTCACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGGCAGCAGGTGCACAGGACCATATCTAAAGAAGAAATGCTGCATCTCTTTGAGTTTGGTGATGATGACAACCCTGAGACTTTAGGCGATTTAGGTCAAGAAAATGAGCACCAAGAAAACCCAATTTTGGTTGGGCATTCTCTGAAACACACAGCACCACATTCAAATGGAAGTAGTTATTCTGATAAGTTGATGGAAAGCTTACTTAGCAAGCATCATCCATGGTGGATTGTCAATTATCATGAACATGAATCCCTGTTGCAAGAAAATGAAGAGGAAAAACTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCGAAAATCCCTGCAATGGGAAGAAGTCCAGAGAGTACCACTAGGTGAGTCTATTGTGCCTATTCAGAAACCAGAAATTCCAAATGACGTGCCCCTTGTATCAGAAACCTGTAACATCTTGCCAAGTAAACTAAGCCGACGTTTCGCCTCACGGAAATGCACAAACCTTGCGCACATGTTGACACTTCGAAGCCAGGGAACAAAATTCGGTTGCAGTACTATCTGTGGGGAATGTGCCCAGGAGATTAGGTGGGAAGACTTGAAGAAGAGATAG 4485 0.4134 MEGKTEDEVVDIESASSGSFNDDSDDDESLVPEIDDGVHLEEPLTEEEIQDLISELLEVESKAAEAQEALEEESLSKVESEVRQELKQSLQGDDLETAVDNEMATFKEEWEAVLDDLETESAHLLEQLDGAGIELPSLFKLIEKEAPNVCSTEAWKKRNHWVGSVATSDIAESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQEPVKNETEGDWDMFNKIVSDGSGIDASFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSTDPFIAAAIANERELDLSDEQRRQFKKVKEEDDAIVDKKLQIRLKHRRHKKISKQREMSTPILLTDSPTQKPSYADHLDLDTKEGTNDNGKIVSDNGNDTCVLIKTDNIKGLDASHHLDKKKLTSSDGLSDPPKSSGDGVIEQRGIKRASVGELDAENKKSRLVVIDSDDEAGVTKEKLDCNTQDVKDELGNNGTGSLPSECLDEKFLCTVCDKVALEVHPHPLLKVITCGDCNRLLKEKAHEKDLGQDCSEGYCTWCGGNSGLVSCKLCNILFCTKCLKKNIGVELVSETQATSWHCCCCHPNLLQRLSLQLEKAVGSARIVVSSSSSDSDDSDDSDESDDSDYSDAKINVTMSSKRRPKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSVSSIEMSPDGCNGNLSEGASVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVPRDRRAELLKKWRAKGGVFLIGYSAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNVMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEELKGFVQRMDMNVAKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQEHPELLRKRCFFAGYQALARIWNHPGILQLTKEAKDYAKEEDAVENFLVDDSSSDENSDYNVLAGEKMGFANDLLQRKDGNGFFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRGKRGKLWKKGKDWYRLDGRTASSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLGDLGQENEHQENPILVGHSLKHTAPHSNGSSYSDKLMESLLSKHHPWWIVNYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLQWEEVQRVPLGESIVPIQKPEIPNDVPLVSETCNILPSKLSRRFASRKCTNLAHMLTLRSQGTKFGCSTICGECAQEIRWEDLKKR* 1495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1607 1494 PANTHER RAD54-LIKE 29 1492 - -
Vra8g1607 1494 Pfam Helicase conserved C-terminal domain 1137 1261 IPR001650 -
Vra8g1607 1494 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1141 1309 IPR001650 -
Vra8g1607 1494 SMART helicmild6 1164 1261 IPR001650 -
Vra8g1607 1494 Coils Coil 1377 1397 - -
Vra8g1607 1494 MobiDBLite consensus disorder prediction 1 43 - -
Vra8g1607 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 995 1329 IPR027417 -
Vra8g1607 1494 SMART ultradead3 729 950 IPR014001 -
Vra8g1607 1494 MobiDBLite consensus disorder prediction 604 632 - -
Vra8g1607 1494 Coils Coil 107 127 - -
Vra8g1607 1494 CDD ADDz_ATRX 485 583 - -
Vra8g1607 1494 Pfam SNF2-related domain 756 1056 IPR000330 GO:0005524|GO:0140658
Vra8g1607 1494 Gene3D - 706 987 IPR038718 -
Vra8g1607 1494 ProSiteProfiles ADD domain profile. 477 609 IPR025766 -
Vra8g1607 1494 CDD SF2_C_SNF 1129 1272 - -
Vra8g1607 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 719 987 IPR027417 -
Vra8g1607 1494 Gene3D - 998 1345 IPR027417 -
Vra8g1607 1494 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 755 938 IPR014001 -
Vra8g1607 1494 Coils Coil 49 76 - -
Vra8g1607 1494 MobiDBLite consensus disorder prediction 402 422 - -
Vra8g1607 1494 PANTHER RAD54-LIKE 29 1492 IPR044574 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1607 Vra-Chr8 33152042 33189132 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1607 763 1314 RAD5 or RAD16-like Gene Family AT5G43530 24.341 2.75e-30 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra8g1607 SNF2_N 1.1e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1607 K10779 - gmx:100794911 2588.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1607 8 33152042 33189132 Vra8g1607 8 33152042 33189132 ECH