Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1602 ATGGGGACTCCCGTGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGACCCAGATGTATCTTGGATTGATGGACAGGTATTAAAAATCAATGGAAAGGATGCTGAAATTGAAACTACCAATGGAAAAAAGGTCAATGCAAATCTATCAAAAATATATCCTAAGGATATGGAAGCTCCTCCTGGTGGAGTGGACGATATGACTAAACTGTCCTATTTGCATGAGCCTGGAGTCCTGCAGAACTTGAAGGCTAGATATGAATTGAATGAAATATACACTTATACTGGAAATATTCTAATTGCTATAAATCCATTCCAAAGACTACCTCATATTTATGGTGCGCACATGATGCAACAATACAAGGGAGCACCATTTGGAGAATTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCATATAGGGCAATGATTAATGAAAAAAAAAGCAATTCAATTCTAGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAGTACCTTGCTTTCTTAGGTGGTAGGGCTGGTACCGAAGGACGGACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGGAATGCTAAAACTGTTAGGAATAACAATTCTAGTCGATTTGGTAAATTTGTTGAGATCCAATTTGATAAAAGTGGAAGAATATCAGGAGCAGCCATCCGAACATATCTTCTAGAGAGATCTCGGGTTTGCCAAATTAATGATCCTGAAAGGAATTACCATTGCTTTTATCTTCTTTGTGCTGCACCGCAGGAGGAAATTGAGAAATACAAATTAGGAAATCCTAAATCATTTCACTACCTTAACCAGTCAAAATGCTATGAACTGGCTGATGTAAGTGATGCTCGTGAATATCTTGCCACTCGAAGAGCTATGGATATTGTTGGAATAAGTCAAAAAGATCAGGAAGCCATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGTAATATTGAATTCACCAAAGGAAAAGAGGTTGACTCATCGGTTCCAAAAGATGACAATGCCAAATTCCACCTAAAAACAACTGCTGAGCTTCTCATGTGTGATGCTGATGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAAGAAGTTATAAAAAGGAGCCTTGACCCCCAAAGTGCAGCAGTGAGTAGAGATGGGTTGGCAAAAACAATTTATTCTCGGCTATTTGACTGGCTGGTGGACAAGATAAATAATTCAATCGGACAAGACCCCAAATCTAAATCGTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGTTTTAAAGCTAACAGTTTCGAGCAATTTTGCATTAATTTCACAAATGAGAAGTTGCAGCAACATTTCAATCAGCACGTGTTTAAAATGGAACAAGAAGAATATACAAAGGAGGAGATCAATTGGAGCTACATTGAATTTGTTGACAATCAAGATGTTTTGGACCTTATTGAGAAGAAACCTGGAGGAATCATTGCTCTCCTCGATGAAGCTTGCATGTTCCCAAAATCAACTCATGAAACATTTGCAAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTATTAAGCCAAAATTGTCTCGAACGGATTTCACAATTGCTCATTATGCTGGGGAGGTACTATACCAGTCTGATCAATTCTTAGACAAAAACAAGGATTATGTGGTTCCAGAACATCAAGATTTATTGAGTGCTTCCAAATGTTCTTTTGTATCTGGCCTTTTTCCACCACTTCCAGAAGAGACGTCAAAATCTTCCAAATTTTCTTCAATTGGTTCTCGTTTTAAGCTACAACTACAAAGCCTAATGGACACATTAAATTCTACAGAACCCCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTTGAGAATGTCAATATTATGCAACAACTTCGCTGTGGTGGTGTATTGGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGTCGCGCTTTCTTTGAATTTATAAACAGATTTGGCATCCTTGCCCCAGAGACCATCGAAGCAAACTGTGATGAAAAAACTGCTTGCCAAAAGATTCTGGAAAAGATGGAGCTTAAAGGATATCAGATTGGAAAAACGAAGGTATTCTTGAGGGCAGGTCAGATGGCTGAATTAGATGCTCGGAGAGCTCAAGTACTTAGTAATGCAGCAAAAGTTATCCAACGTCGTGTACGAACCCATCAAGCACGCAGACACTATCTTGCATTGCGTAAGAAGACCATATACGTGCAGTCTCGGTGGAGAGGAAGACTTGCATGTAAACTCTATGAGCATTTGAGAAGGGAAGCTGCTGCTGTGAAAATTCAAAAGAACATACGTCGACATGAAGCTAGGAAAGCCTATAAAGAACTTCAGGTGGCAGTACTTACCCTGCAAAGAGCTATAAGGGCCACTGCTGCTCGCAAGGAATTCAGATTTAGGAAGCAGACTAAAGCTTCCATCATCATTCAGGCTCGGTGGCGGTGTCACAAAGCTGCCATATATTATAAGAGGCTGAAGAAAGGTACAATAGTTACACAGTGCAGATGGAGGGGGCGTGTATCCAGGAGAGAACTTAGGAAACTAAAAATGGCTGCAAAAGAAACTGGTGCCTTACAAGAAGCAAAGGATAAACTTGAAAAACGAGTGGAGGAACTAACATGGCGTCTCCAACTAGAAAAAGGTTTAAAGACAAATTTAGAAGAATCCAAAGCTCAGGAGATAGCAAAACTGCAGAATTCATTGCAGGAGATGCAGATCAAATATGAAGAAACTAATGCTCTGCTCATTAAAGAGAGAGAGAATGTAAAGAAAGTTGTTGAAGAAGAACCTCCTGTCATTAAAGAAACACAGGTTATTGTTGAAGATACACAGAAGATTGAGACACTGACAGCAGAAATTGAGAGCCTAAAGACCTCGCTTGAGTCAGAGAGACAGAAAGCTGATGACTTCGAAAGAAAATACAATGAAGCCCAAGCTTGTAGTGAAGAGAGAGGTAAAAAAGTAGAAGACATGGAGAAGAAGGGTCGTCAGCTTCAAGAATCATTGACTAGGCTAGAAGAGAAGATTACTAATTTAGAATCAGAGAATCAGGTACTACGTCAACAAGCTGTGTCCATGGCACCTAACAAGTTCCTTTCAGGACGTTCAAGATCAATCATCCAGAGAACTGAAAGTGGTCATATTATACCGGAAGCAAAGACACCTATGTCTAATCAGGAAATGCATAGTGCATCAATGCACCGGAGGGAACCCTCTGACGGTTTGGATGATAAACCACAAAAGTCACTAAATGAGAAACAACAGGAGAATCAAGAGTTACTCATCAGATGTATTGCACAACATCTTGGCTTTGCTGGGAACAGACCAATTGCTGCCTGTATCATATACAAATGCCTTTTGCACTGGCGATCTTTTGAAGTTGAGCGTACTAGTGTTTTTGATCGTATCATCCAAACTATTGGCCATGCAATTGAGACCCAGGATAATAATGATGTCTTGGCTTATTGGTTATCCAATGCCTCTACACTTCTCTTGTTACTCCAGCGCACACTCAAGGCTAGTGGTGCTGCTGGAATGGCTCCGCAACGCCGCCGTTCTTCATCTGCAACGTTGTTTGGAAGGATGACTCAAAGTTTCCGTGGAACTCCAGCTGGAGTAAACCTTTCCCTAGTCAATGGTAGCGCAAGCAGAGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTACCCTGCCCTGCTTTTCAAACAGCAGCTTACAGCATACGTGGAAAAGATATATGGAATGATTCGTGATAATTTGAAGAAAGAAATTTCTCCCTTGCTTGGATTATGCATCCAGGCACCAAGAACATCAAGAGCAAGCCTTGTTAAGGGATCATCACGTTCTGTTGCAAACACTGAAGCCCAGCGTGCCTTGATTGCTCACTGGCAGGGGATAGTGAAGAGCCTAGGAAACTTTCTAAACACTTTGAAAGCTAACCATGTTCCTCCCTTTTTAGTTCGTAAGGTGTTCACGCAAATTTTTTCTTTCATCAATGTACAATTGTTTAATAGTCTTCTTTTACGACGGGAGTGCTGCTCATTTAGTAATGGAGAATATGTCAAAGCTGGTCTGGCTGAATTGGAGCATTGGTGTTATAAGGCAACAGACGAGTATGCAGGTTCTGCCTGGGATGAGCTCAAACATATTAGACAAGCTATTGGATTTCTGGTCATTCATCAGAAACCAAAGAAAACATTGGATGAAATAAGCCATGACCTGTGCCCAGTCCTTAGTATACAGCAACTATATCGGATAAGCACCATGTACTGGGATGACAAATATGGAACGCATAGTGTGTCCTCTGATGTCATATCCAACATGAGAGTATTGATGACTGAAGATTCAAATAATGCAGTTAGTAACTCTTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTTGATGACATATCGAAATCAATGGAACAGATAGATATTGCAGATATAGAGCCACCGCCACTAATTCGTGAAAACTCTGGCTTTAGCTTTTTGTTGCCGCGCCCAGATTGA 4602 0.4044 MGTPVNIIVGSHVWIEDPDVSWIDGQVLKINGKDAEIETTNGKKVNANLSKIYPKDMEAPPGGVDDMTKLSYLHEPGVLQNLKARYELNEIYTYTGNILIAINPFQRLPHIYGAHMMQQYKGAPFGELSPHVFAVADVAYRAMINEKKSNSILVSGESGAGKTETTKMLMQYLAFLGGRAGTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEEIEKYKLGNPKSFHYLNQSKCYELADVSDAREYLATRRAMDIVGISQKDQEAIFRVVAAILHIGNIEFTKGKEVDSSVPKDDNAKFHLKTTAELLMCDADALEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVDKINNSIGQDPKSKSLIGVLDIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKNHKRFIKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVPEHQDLLSASKCSFVSGLFPPLPEETSKSSKFSSIGSRFKLQLQSLMDTLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGILAPETIEANCDEKTACQKILEKMELKGYQIGKTKVFLRAGQMAELDARRAQVLSNAAKVIQRRVRTHQARRHYLALRKKTIYVQSRWRGRLACKLYEHLRREAAAVKIQKNIRRHEARKAYKELQVAVLTLQRAIRATAARKEFRFRKQTKASIIIQARWRCHKAAIYYKRLKKGTIVTQCRWRGRVSRRELRKLKMAAKETGALQEAKDKLEKRVEELTWRLQLEKGLKTNLEESKAQEIAKLQNSLQEMQIKYEETNALLIKERENVKKVVEEEPPVIKETQVIVEDTQKIETLTAEIESLKTSLESERQKADDFERKYNEAQACSEERGKKVEDMEKKGRQLQESLTRLEEKITNLESENQVLRQQAVSMAPNKFLSGRSRSIIQRTESGHIIPEAKTPMSNQEMHSASMHRREPSDGLDDKPQKSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGTPAGVNLSLVNGSASRGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQRALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSSDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSMEQIDIADIEPPPLIRENSGFSFLLPRPD* 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1602 1533 Coils Coil 1017 1051 - -
Vra8g1602 1533 Coils Coil 968 1009 - -
Vra8g1602 1533 PANTHER MYOSIN-9 6 1530 - -
Vra8g1602 1533 Coils Coil 877 904 - -
Vra8g1602 1533 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1602 1533 Pfam DIL domain 1352 1455 IPR002710 -
Vra8g1602 1533 ProSiteProfiles IQ motif profile. 735 762 IPR000048 GO:0005515
Vra8g1602 1533 CDD MYSc_Myo11 76 720 IPR036018 -
Vra8g1602 1533 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vra8g1602 1533 SMART DIL_2 1351 1458 IPR002710 -
Vra8g1602 1533 MobiDBLite consensus disorder prediction 1092 1114 - -
Vra8g1602 1533 Gene3D - 667 730 - -
Vra8g1602 1533 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Vra8g1602 1533 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Vra8g1602 1533 Pfam IQ calmodulin-binding motif 785 804 IPR000048 GO:0005515
Vra8g1602 1533 Pfam IQ calmodulin-binding motif 832 851 IPR000048 GO:0005515
Vra8g1602 1533 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Vra8g1602 1533 Gene3D - 439 623 - -
Vra8g1602 1533 Gene3D Kinesin motor domain 65 662 IPR036961 -
Vra8g1602 1533 SMART MYSc_2a 57 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1602 1533 SMART iq_5 805 827 IPR000048 GO:0005515
Vra8g1602 1533 SMART iq_5 734 756 IPR000048 GO:0005515
Vra8g1602 1533 SMART iq_5 853 875 IPR000048 GO:0005515
Vra8g1602 1533 SMART iq_5 830 852 IPR000048 GO:0005515
Vra8g1602 1533 SMART iq_5 782 804 IPR000048 GO:0005515
Vra8g1602 1533 SMART iq_5 757 779 IPR000048 GO:0005515
Vra8g1602 1533 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1602 1533 MobiDBLite consensus disorder prediction 1071 1115 - -
Vra8g1602 1533 Pfam Myosin N-terminal SH3-like domain 9 50 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vra8g1602 1533 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Vra8g1602 1533 Gene3D - 252 310 - -
Vra8g1602 1533 Gene3D - 833 882 - -
Vra8g1602 1533 Gene3D - 785 832 - -
Vra8g1602 1533 Gene3D - 734 784 - -
Vra8g1602 1533 ProSiteProfiles IQ motif profile. 831 858 IPR000048 GO:0005515
Vra8g1602 1533 PANTHER MYOSIN 6 1530 - -
Vra8g1602 1533 Coils Coil 912 950 - -
Vra8g1602 1533 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1602 1533 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1602 1533 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1602 1533 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1602 1533 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1602 1533 CDD MyosinXI_CBD 1114 1499 IPR037975 GO:0007015
Vra8g1602 1533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 785 IPR027417 -
Vra8g1602 1533 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Vra8g1602 1533 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Vra8g1602 1533 ProSiteProfiles Dilute domain profile. 1163 1476 IPR002710 -
Vra8g1602 1533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 883 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1602 Vra-Chr8 33054950 33069280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1602 1 1533 Myosins gene family AT1G54560 83.181 0.0 2683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1602 K10357 - gmx:100816792 2894.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0326 3 3830830 3849158 Vra8g1602 8 33054950 33069280 PCT
Vra8g1602 8 33054950 33069280 Vra8g1602 8 33054950 33069280 PCT