Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1595 ATGTCTACCGCAGCGCAACCCAAAATTAAGAAAACAGCGGCTACCACCAAGAAACCGCTCTCTCACCCTACTTTCGCCGTGATGATAGTGGAGGCGATTACAAGTCTGAAGGAGAGAACTGGTTCAAGCCAATATGCGATAACCAAGTTCATCGAAGGGAAGCACAAGGAGTTGCCACCAACCTACAAGAAACTTGTACTCATTCAGCTCAAGAAGTCTGTTGCTGCTGGCATACTTGTAAAGGTTAAAAATTCCTTTAAACTTGCACCCACTAAACCTGTCTCTGCTCCTGCTAAGGCTGTTGTTGCTGCTCCTAAAAAGCCCAAGTCTGTTACCAAGACCACCACCAAGGCTGCTTCTAAGCCCAAGCCTGCTCCTAAAAAGAAGCCCGTGTCTAAGCCCAAGGCCAAGACTGCTGCTGCAGCTGCCAAGCCAAAGGCCAAGCCTGCCAAGAAGGTTGTTGCCAAGTCTGCCAAGAAGACTCCGGTAAAGGCGGTGAAGAAGCCCAAGAGTGTAGTGAAGAAACCCAAGAGCGTGAAGTCTCCAGCCAAGAAAACCAAGAAGTGA 567 0.4903 MSTAAQPKIKKTAATTKKPLSHPTFAVMIVEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGILVKVKNSFKLAPTKPVSAPAKAVVAAPKKPKSVTKTTTKAASKPKPAPKKKPVSKPKAKTAAAAAKPKAKPAKKVVAKSAKKTPVKAVKKPKSVVKKPKSVKSPAKKTKK* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1595 188 SMART h15plus2 19 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra8g1595 188 CDD H15 21 93 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra8g1595 188 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 2 187 - -
Vra8g1595 188 SUPERFAMILY "Winged helix" DNA-binding domain 18 99 IPR036390 -
Vra8g1595 188 MobiDBLite consensus disorder prediction 149 188 - -
Vra8g1595 188 Pfam linker histone H1 and H5 family 22 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra8g1595 188 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 21 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra8g1595 188 MobiDBLite consensus disorder prediction 97 188 - -
Vra8g1595 188 PRINTS Histone H5 signature 8 29 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra8g1595 188 PRINTS Histone H5 signature 35 52 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra8g1595 188 PRINTS Histone H5 signature 111 125 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra8g1595 188 PRINTS Histone H5 signature 144 161 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra8g1595 188 PRINTS Histone H5 signature 166 185 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra8g1595 188 PANTHER HISTONE H1 2 187 - -
Vra8g1595 188 Gene3D - 16 101 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1595 Vra-Chr8 32975769 32976694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1595 23 88 Single Myb Histone (SMH) Gene Family AT1G72740 31.818 2.39e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1595 K11275 - gmx:100810590 143.28