Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1594 ATGCACATCCTCGCGAGTCTCTTGCTTCTCTTTTGTTTCCCTGTCTTCTTAAACGCCGCACCCTCCTCCGGCAAAGGTGGCAGCGATTCTTTGATGTTGGGCTGTGGGTTGGACAAAAGCGGTGGCAAAGACAGCGATGGTAGACAATGGAGCTCCGACGAGAAGTACCTCTCAGAGAATAACACCCTCACGTTCAAAGCCTCTTTCCAAGACCCTTCGCTTTTGTCCGATGTTCCATATATGTCTGCACGAATTTTCACTAGCAAAGCATCCTACAAGTTCCCCATCCAAGGTGACAAACGTTACTGGCTCAGGCTCCATTTCTACCCCTCCTCTTACAACACCTTCGACCCCGTTGACTCTTATTTCTCCGTCACCGCAAACGGCCTCAAGCTTCTTTCCAACTTCAGCGCCTCCGTCACTTGCCAAGCCCTCTCACAAGCCTACCTCGACCGAGAGTATTCCCTTGCGCCTTTGGATTCTGACACTCTCACCGTCACCTTCACGCCCTCTGACAAGCACGATAAAGCTTTTGCATTTGTTAATGGGATTGAGCTCATCGAAATGCCGGAGTTGTTTGACGAGGCTCCCTTGTTGGGTTTCGATGACCAAACCATGGATACCAAGACTATGCATTTTCAGACCATGTTCAGGTTAAACGTTGGAGGACAATACATCGCTCCAAGTAATGATTCTGGTCTATCCAGGATGTGGTACGATGATACGCCTTATATTTATGGTTCTGCCACTGGTGTCACCAACCGAGCTACCAAGGAAGAAAAAATCGATTACAAAACCCAGCCAGAGTCCATTGCTCCTGTCGATGTCTACTCCACTTCCCGATCCATGGGAGCCAATAAGAATGTCAACATGGGCTACAATCTCACATGGATATTCCAAGTTGACCCGGCTTCTATGTATCTTACCCGGTTGCATTTCTGCGAATATCACTATTCCAAATTAAATGAGATTGTTTTCAAAATCTACATCAACAACCGCACAGCGGAGACTGCTGCTGATGTAATTGGGTGGTCAGGAGGTCAAGGAGTGCCAACGTACAAGGATTATGTATTATATGTGAAAGATCAACCAGGTGACGATGAACTCTGGCTTGCTTTGCACCCTGCAAATGAATCAAAGCCAGAATTTTATGACGCGTTACTCAATGGGGTGGAGGTGTTCAAGCTCAATGACACAGACCTGTCTGGTCCCAATCCCCAGCCTTCTGACATGCTGGTTCAACATGAGCACAAGTCAAATACTTTCCATAGAAAACATGAGACTAGTAGGACTTTTGTTATAAGCACTGCTGGGGGTGCTGCAGGTTTTGCTTTGGTGGCTGCAATAGTTGTTGTTGTTCGTCGTCAAAAGAAAAAGGGAGCTCCGGGGACGTACACCGGCACGTCCAGCTGGCTGCCTCTTTATGGCCATTCGCACACAGCAGGCACCAAATCCTCAGGATCAGGGAAGAGTACGGGCCATTCCAACCTAACAGCCATGACTCAAGGATTGTGCCGGTATTTCTCCTTACATGATATGAAGCAAGCTACCAAGAATTTCGATGAATCTAACGTGATAGGGGTGGGAGGGTTTGGAAAGGTTTATAAGGGTGTTATTGATAATGGATTCAAAGTGGCAATCAAGAGATCGAACCCGCAATCAGAACAAGGAGTGAACGAGTTTCAGACAGAGATTGAGATGCTGTCCAAGTTGAGACACAAGCATTTGGTGTCCTTGATTGGTTTTTGCGAGGAGGGTGATGAGATGTGTCTGGTTTATGACTACATGGCTCTTGGCACCATGAGGGAACACCTTTACAAGGGAAACAAGCCATTGGACCTGCTAACATGGAAGCAGAGGTTGGAGATCTGCATAGGAGCCGCAAGAGGCCTTCACTACCTTCACACTGGAGCAAAATACACCATCATTCACAGAGATGTCAAAACAACCAACATTCTCCTTGATGAAAACTGGGTTGCCAAGGTTTCAGATTTTGGACTGTCCAAAACAGGTCCAAACATGAATCAAGGTCATATTAGTACAGTCGTGAAGGGTAGCTTTGGATACTTGGATCCCGAATATTTCAGGAGGCAACAGTTGACTGAGAAGTCTGATGTGTATTCGTTTGGGGTGGTGCTGTTTGAGGCCCTTTGTGCAAGGCCTGCTCTCAACCCTAACCTTCCGAAGGAACAGGTAAGCCTTGCGGAATGGGCATTGTACAACAAAAGAAGAGGAACACTTGAGGACATCATTGACCCCAGCATCAGAGGGAAGATGAACCCTGAAAGCTTGACCAAGTTTGCTGATACAGCTGAGAAGTGTGTATCTGATAATGGATTCGAACGACCCTCCATGAATGACCTACTGTGGAATCTCGAATTCGCTCTCAACTTGGAAAAAAACACAGATGGTTCAACTGCTCCAGGTCGGGACGAAGGTGAGTTCTCAGAAGTAAGCTTGGAAGACAACACGGCAACTCATTACAAAAACCTCGGCCTTGAAAGCGAGCAAGGGCTTAGCCAAGACTCCAGTAATGGTAGCTCTGCTGTCATCTTCTCTCAAATTGCCAATCCAGCAGGACGATGA 2586 0.471 MHILASLLLLFCFPVFLNAAPSSGKGGSDSLMLGCGLDKSGGKDSDGRQWSSDEKYLSENNTLTFKASFQDPSLLSDVPYMSARIFTSKASYKFPIQGDKRYWLRLHFYPSSYNTFDPVDSYFSVTANGLKLLSNFSASVTCQALSQAYLDREYSLAPLDSDTLTVTFTPSDKHDKAFAFVNGIELIEMPELFDEAPLLGFDDQTMDTKTMHFQTMFRLNVGGQYIAPSNDSGLSRMWYDDTPYIYGSATGVTNRATKEEKIDYKTQPESIAPVDVYSTSRSMGANKNVNMGYNLTWIFQVDPASMYLTRLHFCEYHYSKLNEIVFKIYINNRTAETAADVIGWSGGQGVPTYKDYVLYVKDQPGDDELWLALHPANESKPEFYDALLNGVEVFKLNDTDLSGPNPQPSDMLVQHEHKSNTFHRKHETSRTFVISTAGGAAGFALVAAIVVVVRRQKKKGAPGTYTGTSSWLPLYGHSHTAGTKSSGSGKSTGHSNLTAMTQGLCRYFSLHDMKQATKNFDESNVIGVGGFGKVYKGVIDNGFKVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEGDEMCLVYDYMALGTMREHLYKGNKPLDLLTWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMNQGHISTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPALNPNLPKEQVSLAEWALYNKRRGTLEDIIDPSIRGKMNPESLTKFADTAEKCVSDNGFERPSMNDLLWNLEFALNLEKNTDGSTAPGRDEGEFSEVSLEDNTATHYKNLGLESEQGLSQDSSNGSSAVIFSQIANPAGR* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1594 861 Pfam Malectin-like domain 34 395 IPR024788 -
Vra8g1594 861 SMART serkin_6 520 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1594 861 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Vra8g1594 861 Pfam Protein tyrosine and serine/threonine kinase 524 789 IPR001245 GO:0004672|GO:0006468
Vra8g1594 861 Gene3D Transferase(Phosphotransferase) domain 1 596 808 - -
Vra8g1594 861 CDD STKc_IRAK 526 793 - -
Vra8g1594 861 PANTHER OS07G0166700 PROTEIN 25 845 IPR045272 GO:0004714|GO:0006468
Vra8g1594 861 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 25 845 - -
Vra8g1594 861 ProSitePatterns Protein kinases ATP-binding region signature. 526 548 IPR017441 GO:0005524
Vra8g1594 861 ProSiteProfiles Protein kinase domain profile. 520 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1594 861 Gene3D Phosphorylase Kinase; domain 1 481 595 - -
Vra8g1594 861 Gene3D - 32 190 - -
Vra8g1594 861 Gene3D - 212 397 - -
Vra8g1594 861 SUPERFAMILY Protein kinase-like (PK-like) 496 795 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1594 Vra-Chr8 32967883 32971156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1594 28 861 Receptor kinase-like Gene Family AT3G51550 51.606 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra8g1594 Malectin_like 8.8e-39 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1594 - - gmx:100791236 1367.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0680 10 12872573 12876035 Vra8g1594 8 32967883 32971156 PCT