Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1590 ATGGTGTCCAGCCAGGTGGTGAAAGTGAAGAGAGATACGCTACGACCATGCATGACATGCCCTCTCTGCCATAATTTCTACAAAGATGCCACCACCATCTCTCTCTGCCTTCACACCTTTTGCAGGAAGTGCATATATGATAAACTATCGGATGAGGAGATGGATTGCTGTCCTGTGTGCAACATTGATTTAGGCTGCCTTCCGGTTGAAAAGCTCAGGCCAGACCATAATTTGCAAGATATAAGGGCAAAAGTATTCCCGTTTAAGAGAAAAAAGATCAAGGCACAGGAAGTTTTGTCTTCAATATCATTGCCAACTAAAAGGAAAGAAAGATCACTTTCATCATTGGTAGTCAGTGCTCCCAAAGTTTCAATGCAACCCGGCTTTACAGGAAAGAGAACTAAAACCAGTACAAGAAAAGCTGCTGCTGCTTTACGTGGATGCAGTTTTCTTCTTGAAGAATCCATAAAGAAGGAAGAAACAAACGGTGAAGATAATATGGATCCTTCAATGGCCGAGCCTTCTAAAAAGCATAAGCCCAATGAAGATAAAGAGAACAGTGTGGAACATGGAGAAGGGAAGGTTGATCTCTGGACACCACTGAACTGTCTTGTTGAAGCTGCCAACCGAACAAAGTCCTCCAGGTCAAATTCACAAGCAATTCCTCTTGCCAAATTAGAGTCCCCATTTACTCCTCATGGTGGACAAAATATACCTGAAATTACAACCAAAACAGACCTACCTGCTTCTGTCCACAGTGAACTAAACATTCCAAAATCCAAAAATAAGGATACTGGACACAAAACAATATTAGGGGATGACAAGGATGCAAACAGCTTGCCTTCAGGACCAGTGAAGAGAAGAAGGTTGCGTCCTGCTGGTCAGAAAAGAGTTGCAGCATCTGAGATGTCTTCCTCATCCCCAGCTCCACTAAATGCAACAGGGAGTAAGTGCAACAGGAAAAACAGTCCTATCTGGTTTTCATTAGTTGCTTCTGAGGACCAGAAAGGAGATATTCCCTTGCCACAGATCTCAGCATGTTATTTAAGAATAAAGGATGGTACTGTGCCCGTCTCATTTATTCAAAAGTACCTTGTGAAGAAACTTAATCTTTCCAGTGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAAGCAGTGCTTCCATCATTACAACTGCATAATTTAGTAGATCTATGGTTCCGGACAGCCTCAACCTCGAAAAGGATACCAGCATCAGTGGGGTCCTCAGCCAAAGATTTTGTGATGGTTTTATCGTATTGTCGAAAGACATTGCCCCCTTGA 1302 0.4293 MVSSQVVKVKRDTLRPCMTCPLCHNFYKDATTISLCLHTFCRKCIYDKLSDEEMDCCPVCNIDLGCLPVEKLRPDHNLQDIRAKVFPFKRKKIKAQEVLSSISLPTKRKERSLSSLVVSAPKVSMQPGFTGKRTKTSTRKAAAALRGCSFLLEESIKKEETNGEDNMDPSMAEPSKKHKPNEDKENSVEHGEGKVDLWTPLNCLVEAANRTKSSRSNSQAIPLAKLESPFTPHGGQNIPEITTKTDLPASVHSELNIPKSKNKDTGHKTILGDDKDANSLPSGPVKRRRLRPAGQKRVAASEMSSSSPAPLNATGSKCNRKNSPIWFSLVASEDQKGDIPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLSSEAEVEIMCRGQAVLPSLQLHNLVDLWFRTASTSKRIPASVGSSAKDFVMVLSYCRKTLPP* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1590 433 Gene3D - 310 408 - -
Vra8g1590 433 MobiDBLite consensus disorder prediction 299 316 - -
Vra8g1590 433 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Vra8g1590 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 111 IPR013083 -
Vra8g1590 433 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 431 IPR044807 GO:0004842
Vra8g1590 433 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Vra8g1590 433 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Vra8g1590 433 SMART ring_2 20 60 IPR001841 -
Vra8g1590 433 MobiDBLite consensus disorder prediction 158 191 - -
Vra8g1590 433 MobiDBLite consensus disorder prediction 257 274 - -
Vra8g1590 433 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 4 431 - -
Vra8g1590 433 SUPERFAMILY RING/U-box 14 84 - -
Vra8g1590 433 MobiDBLite consensus disorder prediction 256 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1590 Vra-Chr8 32949740 32954732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1590 1 352 C3H Transcription Factor Family AT2G30580 43.396 1.04e-84 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1590 K16277 - gmx:100783999 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1590 8 32949740 32954732 Vra8g1590 8 32949740 32954732 ECH