Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1587 ATGATTAACTTCGAAGAAACCGAGTTGCGACTCGGCCTCCCTGGTGCCTCCGCAACTGATCATGGCGAGTTAACTCTGAAGGGCACTGGTGGCAAGAGAGGCTTCTCTGAAACTGCTTCTGTTGATCTAAAGCTCAATCTTTCTTCCAATAACGACTCTGCCTCGGTTTCACCGGCTACTGAGAACCCCAAAGAGAAAACTACAACAGTTGAACCTCCTCCTCGGGCTAGCGACCCAGCAAAGCCACCTGCAAAGGCACAGGTGGTGGGTTGGCCACCAGTGAGATCTTTTAGGAAGAACATAGTGAATGTTCATCATCAAAGGAGCAATAGCAATAGCAATAGCAATGAAGAAGGAGCAGCGGCGTTTGTGAAAGTGAGCATGGATGGTGCACCGTATCTACGGAAGGTGGACATAAGGTTGTACAAGAGCTACCAAGAGTTGTCAGAAGCGCTGGCTAAGATGTTCAGTTCCTTTACAATTCAGAAGTGTGGGTCCAAATTGATAGACCTTTTGAATGGCTCTGATTATGTACCCACATATGAAGACAAGGACGGAGACTGGATGCTCGTCGGTGATGTTCCCTGGGAAATGTTCGTTCAAACATGCAAGCGCCTCCGCATAATGAAGGGTTCTGAAGCAATTGGCCTTGCGCCAAGAGCCGTGGACAAGTGCAAGAGCAGAAGCTGA 690 0.487 MINFEETELRLGLPGASATDHGELTLKGTGGKRGFSETASVDLKLNLSSNNDSASVSPATENPKEKTTTVEPPPRASDPAKPPAKAQVVGWPPVRSFRKNIVNVHHQRSNSNSNSNEEGAAAFVKVSMDGAPYLRKVDIRLYKSYQELSEALAKMFSSFTIQKCGSKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQTCKRLRIMKGSEAIGLAPRAVDKCKSRS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1587 229 Pfam AUX/IAA family 6 220 IPR033389 -
Vra8g1587 229 MobiDBLite consensus disorder prediction 41 67 - -
Vra8g1587 229 SUPERFAMILY CAD & PB1 domains 111 210 - -
Vra8g1587 229 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 222 IPR003311 GO:0005634|GO:0006355
Vra8g1587 229 PANTHER AUXIN-INDUCED PROTEIN AUX28 2 222 - -
Vra8g1587 229 MobiDBLite consensus disorder prediction 13 88 - -
Vra8g1587 229 Gene3D - 115 223 - -
Vra8g1587 229 ProSiteProfiles PB1 domain profile. 121 211 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1587 Vra-Chr8 32929744 32932418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1587 124 214 B3 DNA Binding Superfamily AT3G61830 36.264 1.54e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra8g1587 AUX_IAA 4.3e-78 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1587 K14484 - gmx:100781847 343.969