Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1586 ATGGCAGGTAACAGTAGCTCGGAGGGGTTGGGAGATGATTTCTTCGAGCAGATCTTAGCAGTGCCTGAAGCTCCAGTGGGATATGGCAGAACCGTAGCCACTGACGTTGGAATGCTGCAATTGGGGTCCACAACTCCAACTGCCGCTGCTCTCAGAGGTGGTGGAATGATGCCTCTGGGCCTGAATTTGGAGCAATCTGCCTTTCTAAGCCACCATGATTCCAGAAACCTAGTTGACGACGTTGTTAATGTTGATCCCACCGTTCACAATAATCACCACCACCATCATCAACACCTCACGCTCCATAATAACAACTCATCACCCTCTTCTACCCCACCAATCACCGATCGCGATTCGATGCACGTGAGAGGTTTGTTTTCAGCTTTTGGGCAGTTGCATAGTCCTACTCTTGTTCCCTCTGTCCGCCCCACGCTGTCATCGCCTCCACCGCCTCCTCAGCCACAGCTCCACCTCCACCACCATAACCAACAGGTAATGATCTCATACAAATTGCAGGCGTTTCAAGGACAGGGAGGTGGAGGTCCAGCGTCTATGAGTGGTACCCAACAAGCACCTGGCATTCGCCCTCGTGTGAGAGCAAGAAGAGGGCAAGCCACAGATCCACATAGTATCGCTGAACGGTTGCGTCGCGAAAGAATTGCCGAAAGAATGAAGGCATTGCAGGAGTTAGTTCCCAGCATCAATAAGACGGACAGAGCGGTGATGCTTGATGAAATTGTGGATTATGTCAAGTTCCTAAGGCTCCAGGTTAAGGTCCTGAGCATGAGTAGACTGGGGGGAGCTGGTGCAGTTGCTCAACTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGCAAGGAGAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGGTCCAATGACGGTACAGAACAACAAGTTGCTAAACTTATGGAAGAAGACGTGGGTGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGCATCATGCCCATATCTCTAGCCTCAGCCATTTTTCGTATGCCTCAATCAGAATCATCAACAGTGATCAAGCCTGAATCAAACAGTCACTGA 1083 0.5042 MAGNSSSEGLGDDFFEQILAVPEAPVGYGRTVATDVGMLQLGSTTPTAAALRGGGMMPLGLNLEQSAFLSHHDSRNLVDDVVNVDPTVHNNHHHHHQHLTLHNNNSSPSSTPPITDRDSMHVRGLFSAFGQLHSPTLVPSVRPTLSSPPPPPQPQLHLHHHNQQVMISYKLQAFQGQGGGGPASMSGTQQAPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAVMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEQGEDIEGGANEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSESSTVIKPESNSH* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1586 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 263 IPR036638 GO:0046983
Vra8g1586 360 MobiDBLite consensus disorder prediction 137 157 - -
Vra8g1586 360 MobiDBLite consensus disorder prediction 176 208 - -
Vra8g1586 360 Gene3D - 199 261 IPR036638 GO:0046983
Vra8g1586 360 MobiDBLite consensus disorder prediction 91 118 - -
Vra8g1586 360 MobiDBLite consensus disorder prediction 142 156 - -
Vra8g1586 360 Pfam Helix-loop-helix DNA-binding domain 209 253 IPR011598 GO:0046983
Vra8g1586 360 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 8 347 - -
Vra8g1586 360 MobiDBLite consensus disorder prediction 101 116 - -
Vra8g1586 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 253 IPR011598 GO:0046983
Vra8g1586 360 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 347 - -
Vra8g1586 360 SMART finulus 210 259 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1586 Vra-Chr8 32919754 32924300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1586 186 358 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 75.287 4.92e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g1586 HLH 8.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1586 - - vun:114189791 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1586 8 32919754 32924300 Vra8g1586 8 32919754 32924300 ECH