Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1585 ATGGATAGGGTGTTCTCCTCAGTCGACGAAATCGCCGATCACTTCTGGCCATCGCCGCCGATCCCCGTCTCCGCCGCCGATGAGGCCTCCAAGATGAGCCGTAGCGCCTCCGAGTGGGCCTTCCAACGCTTCATCCAGGAAGCTTCCGCCCCCTCTCCTTCCTCCGCCACCACGGCTGCTTCTGCCGCCGCCACTGACGTCGTCTTTGTCGAGATCGACGATCATCCCAAACCTGCCCCTGCTCCTCCCCAGAACGCCGCCGTTTTGCCCAATGCCCCTGTTCCCGTACCCCTTGACTCCGATGAGTACCAGGCCTTCCTCAAGAGCAAGCTCAACCTTGCATGCGCAGCTGTTGCCATGACTAGGGCATCTTTGGCTAAATCTCAAGAGCCAGCCCCTTTTTCTGATGGTGGATCACAGCCTATCGATCCTTCTCAAGTTGGATCTCAGACTACATCTAAAGGATCTATTCCTTCTGGAAATGATCCATCTAAGTTACAAGATAAAGATACGAAAGTACCAGTTGGGATGCCTTCCATACCTTCCACGCAAAAGAAACCTGTTGTTGCAGTTAGACCATCAACAAGTGGATCATCAAGAGAACTGTCAGATGATGATGATGCTGAGGGAGAGACATCTATGAACGACATGGACCCAGCTGATGCAAAAAGAGTAAGGAGGATGCTATCCAATAGGGAGTCTGCCCGGCGCTCTAGAAGAAGAAAGCAAGCTCATTTAACTGACCTAGAAACACAGGTTTCTCAATTAAGAGGTGAAAATTCTACCTTGTTGAAGCGCCTTACTGATGTAAGTCAGAAATACAGTGAATCTGCTGTTGACAACAGAGTTTTAAAAGCTGATGTGGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACCGTCAAAAGAATTACCGGGTTGAACCCAATGGTTCATGCCATGTCTGACATGTCATCATTGGGCATGACGTTATTTGATGGAAGAAGCCCTTCAGACACTTCAGCCGATGCAGCTGTTCCTGTGCAAGATGATCATCATCACTTCTATCAACCCACATCTAATAATCCTATTCCCAGTCATGATCCGATAGTCAACGATGGGTTGGCGGGCATGTCTTCAATTGAAAATGTGCAGCAGAACCCTGCAGCAGTGGCAGGTGGGAACAAGATGGGTCAAACTGCTTCCCTGCAGCGGGTAGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGGTGTGGATTCCTGTGGACCTCCCTCTAATGGGGAGCAGTAA 1278 0.4992 MDRVFSSVDEIADHFWPSPPIPVSAADEASKMSRSASEWAFQRFIQEASAPSPSSATTAASAAATDVVFVEIDDHPKPAPAPPQNAAVLPNAPVPVPLDSDEYQAFLKSKLNLACAAVAMTRASLAKSQEPAPFSDGGSQPIDPSQVGSQTTSKGSIPSGNDPSKLQDKDTKVPVGMPSIPSTQKKPVVAVRPSTSGSSRELSDDDDAEGETSMNDMDPADAKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSESAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMVHAMSDMSSLGMTLFDGRSPSDTSADAAVPVQDDHHHFYQPTSNNPIPSHDPIVNDGLAGMSSIENVQQNPAAVAGGNKMGQTASLQRVASLEHLQKRIRGGVDSCGPPSNGEQ* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1585 425 Pfam Basic leucine-zipper C terminal 290 414 IPR020983 -
Vra8g1585 425 SMART brlzneu 219 283 IPR004827 GO:0003700|GO:0006355
Vra8g1585 425 MobiDBLite consensus disorder prediction 230 249 - -
Vra8g1585 425 Gene3D - 222 278 - -
Vra8g1585 425 Pfam bZIP transcription factor 222 275 IPR004827 GO:0003700|GO:0006355
Vra8g1585 425 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 226 241 IPR004827 GO:0003700|GO:0006355
Vra8g1585 425 SUPERFAMILY Leucine zipper domain 223 273 IPR046347 GO:0003700|GO:0006355
Vra8g1585 425 MobiDBLite consensus disorder prediction 129 223 - -
Vra8g1585 425 PANTHER BASIC LEUCINE ZIPPER 63 1 406 - -
Vra8g1585 425 PANTHER BZIP TRANSCRIPTION FACTOR 1 406 - -
Vra8g1585 425 CDD bZIP_plant_GBF1 224 275 IPR045314 GO:0003700|GO:0006355
Vra8g1585 425 Coils Coil 239 266 - -
Vra8g1585 425 Coils Coil 281 301 - -
Vra8g1585 425 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 221 276 IPR004827 GO:0003700|GO:0006355
Vra8g1585 425 MobiDBLite consensus disorder prediction 133 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1585 Vra-Chr8 32908849 32915369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1585 1 312 bZIP Transcription Factor Family AT4G02640 39.645 5.06e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra8g1585 bZIP_C 8.7e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1585 K25784 - gmx:100170702 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1585 8 32908849 32915369 Vra8g1585 8 32908849 32915369 ECH
Vra10g0664 10 12460328 12462574 Vra8g1585 8 32908849 32915369 PCT