Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1580 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTGAGACATAAGCATGAAAAGAAAAAATATGTGTTGAAGAAGATTCGCCTTGCACGTCAAACCGAGCGCTCTCGCAGATCTGCACATCTGGAGATGGAGCTCATCTCTAAATTAAGAAACCAATTCATTGTGGAGTACAAAGATTCGTGGGTAGAAAAGGGTTGCTATGTCTGCATCATTATAGGTTATTGTGAGGGAGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTCCTGTTTCCTGAGGAGAAACTCTGTAAGTGGCTCGTTCAACTTCTTATGGCTCTTGAGTACTTGCACATGAACCACATTCTTCACCGTGATGTCAAGTGTTCAAATATCTTTTTGACAAAAGATCATGACATACGCCTCGGTGATTTTGGACTTGCCAAAATGTTGACGTCTGATGATCTCGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGACATCGCATAAGCCTGCATTCAAAGCATTTGATATACAGGCATTGATTAACAAGATTAATAAATCAATAGTGGCTCCACTGCCTACAAAATATTCTAGTTCGTTTCGAGGTCTTGTTAAAAGTATGCTGCGCAAGAATCCAGAGCTTAGGCCAAGTGCTACAGAGCTGCTTGGACATCCACATCTTCAGTCTTACGTTCTTAAGGTCCATCTCAAAATCAATAGCCCCAGGCGAAACACATTGCCAGTTCATTGGCCAGAATCCAATTACTTGAAGAAAACTAGATTTTTGGTGCCAGAAGATGACCCTGTTTCTCTGTTTAGGGATAAGCGACATTCTTTCAGTAATGATCGGACTCTGAACCCTAGTGTATCTGGAGCTGATCAAGATTCTTTGTGCTCTACTCTTGAAATAGATTGTACTCCTGACCATTTGAATCAAAGATTAGCAGAACTACGTGTTGGAGATAGCCATGAATTGAAATCAATCCGGAAGCCTGCTGTTTCCAGAACTTCTAGCATTGCTAAGACTCCAAGATTCACTTCCTCAAAAGTCTCTGGCACCAACAAGAAAACAATGAAATTCTCAAAGAATCATAAAGAGATGCCTCGTTCACACAGTACCACAAAATCTGCTAATACTAACCGTAGAGCATCATTTCCATTGCCAACAAGAGGTGGTATTCGACAGCCTCCTTCCGGGCCCAATGCCACTATGATTAGTCACGTGTCTTCACCAGATATCTCAGTCAATTCTCCACGTATTGATAAGATGGCTGAATTCCCATTAACTTCATATGTGGATTCTTTGTTCCCCATCAATAAAACATCATCCTTTGTTCAATGTTCCTCTGGCCTCCCATCCAGCGGCAACCATTCCACTGTGATAGACAAATGCACAGTAGATGTACATGATACAGCCTCAAACAGACCCGACTGTACTGAGTCTTGGCAGGGAATCAAGCAGAGCGTGTTAAAGGAAATTGATGAGGATAAAAGTGGTTACTCTGATCAAAATGCAACGGCAGGTGCTTCAAGCCACACATCTTCTGACTTGCGCCGTAGACAATTTGACCCGTCATCATTCCAACAAAGGGCTGAAGCTTTAGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACAGCAGGCAAGGTATGATGAACTTGGGGTTCTATTGAAACCATTTGGGCCTGGAAAGGTTTCCCCAAGGGAAACAGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAATACTTTCAACCCAGAAGAATCCATGTAA 1863 0.4214 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKLRNQFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALEYLHMNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSHKPAFKAFDIQALINKINKSIVAPLPTKYSSSFRGLVKSMLRKNPELRPSATELLGHPHLQSYVLKVHLKINSPRRNTLPVHWPESNYLKKTRFLVPEDDPVSLFRDKRHSFSNDRTLNPSVSGADQDSLCSTLEIDCTPDHLNQRLAELRVGDSHELKSIRKPAVSRTSSIAKTPRFTSSKVSGTNKKTMKFSKNHKEMPRSHSTTKSANTNRRASFPLPTRGGIRQPPSGPNATMISHVSSPDISVNSPRIDKMAEFPLTSYVDSLFPINKTSSFVQCSSGLPSSGNHSTVIDKCTVDVHDTASNRPDCTESWQGIKQSVLKEIDEDKSGYSDQNATAGASSHTSSDLRRRQFDPSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKENTFNPEESM* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1580 620 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 605 - -
Vra8g1580 620 CDD STKc_Nek 3 258 - -
Vra8g1580 620 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1580 620 SUPERFAMILY Protein kinase-like (PK-like) 1 300 IPR011009 -
Vra8g1580 620 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1580 620 MobiDBLite consensus disorder prediction 531 546 - -
Vra8g1580 620 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vra8g1580 620 MobiDBLite consensus disorder prediction 527 555 - -
Vra8g1580 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vra8g1580 620 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1580 620 PANTHER SERINE/THREONINE-KINASE NEK4 1 605 - -
Vra8g1580 620 MobiDBLite consensus disorder prediction 390 431 - -
Vra8g1580 620 Gene3D Transferase(Phosphotransferase) domain 1 84 274 - -
Vra8g1580 620 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1580 Vra-Chr8 32852439 32860625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1580 10 260 MAP Kinase Kinase Kinase AT1G53570 31.250 1.96e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vra8g1580 Pkinase 1.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1580 K08857 - gmx:100804898 1127.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1580 8 32852439 32860625 Vra8g1580 8 32852439 32860625 ECH
Vra10g0648 10 12349750 12356738 Vra8g1580 8 32852439 32860625 PCT