Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1579 ATGTTCGATGGAGTACCTGAGCAGTTCCACCAATTCATAACTCCAAGGACCTCACTGCCTCTTCACTTACCTTTCCCTCTCCATGCTTCTGCCAATCCTAATACCACCTTCCCTTCCAATTTTGATCCTTATAATCCTCATCATCATCAGCTCCCACTCCAACCCACCACTCTCTTGCACCCGTTACACCACCCACCTCATCCTACCCACAAAGATGAACAACACAAGGAACAAAACACCGCCGTTGCCCTCCCAATGAACTTCCAAATCCAACGAGATCAAAGGCACCTCATTCATCCCTGGACTAACGACGAAGTCCTTTCTCTCTTGAGGATCAGATCTAGCATGGAGAGTTGGTTCCCAGAACTCACTTGGGAACACGTCTCCAGGAAGCTGGCAGAGCTTGGATATAAAAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAAAGTAGATACTTCAACAACAACATTAATTACGGCAAGAATAACAACAATTATCGTTTTCTCAGTGAGCTTGAACAGCTTTACCATCAAGGGGGTGCCGATCATCTCGCCACCCAAGAAAAGACTCACCAACTACACAAACAAGACAAGATGGACCACCATCCATTGGAAGAAGGGGATTCTGGAAAACTTGACCCACCCCTCACCAAACAAAACCACGATGCAGCAGCTGTGGAGAAGAATCAGGGACGCAAGAGAAAGAGGCCCGGTAGGTTTGAAATGTTCAAGGGTTTTTGTGAGAGCATTGTGCACAAGATGATGGCGCAGCAAGAAGAGATGCACAACAAGCTCCTCGAGGACATGATGAAGAGAGACGAAGAGAAGTTCACTCGAGAGGAAGCTTGGAAGAAGCAAGAGATGGAGAAGATGAACAAGGAGCTCGAGATGATGGCTCGTGAGCAGGCCATTGCAGGCGATAGACAGACCAACATTATTCAAATACTGAACAAATTCTCGGTCACTCCTGCATCGAACAAAAGCCTCAAGGTAGTGACTAATGGTTCAAACCTAAAATCTCACATTAGCCAAAACCCTAATCCTTCACAAAACATCCCAGCTACACCCGCAACAGAAAACCCTACCTCGAGTGTTGCACAAGACACATTACAACTGATTACCAATCCTTCTACTTCTTCCTCTTCGGCTCAAGTTCCTCAACCCAACCCTAGTTCTTCCTCTCTAAATAGCCAGAATAACATAAACCCAATAGAGAGAAATTCGGTTTTGAATAAAAGCTTGTCATCAAACGTTGGTGAGAAAGACGATGTTGGGAGAAGGTGGCCAAAGGACGAAGTGTTAGCACTGATAAACCTGAGGTGCAGCAGTGTGAGCAACAACAGCAGCAGCAATGAGGAGAAGGAAGGGAACAAGGTGCCTCTGTGGGAGAGAATCTCACAAGGGATGTCGGAGTTAGGATACAGGAGGAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACTAAGGATGTTAATAAGAAGAGGTCCCTGGACTCAAGGACTTGTCCCTACTTTCATCAATTGAGCAGTCTCTATAATGAAGGAAAACTGGTTCTACAATCGGAAAGGCCAGAAAGCCACACGGATAATCAAGCTGAGAATCTGGAGCAAGTGCAAGCGGATCAAACACGAGCCGAGTCTTCTTCTCAAGTGGGGTCTGGTGGTTTCAGTGTGCAGCAGCAGGTTGATCATGGAGGTGAGAAAACCTTGATGCAAGTACCTTCTTTGGATTTTGATCAGTTTTAA 1773 0.4585 MFDGVPEQFHQFITPRTSLPLHLPFPLHASANPNTTFPSNFDPYNPHHHQLPLQPTTLLHPLHHPPHPTHKDEQHKEQNTAVALPMNFQIQRDQRHLIHPWTNDEVLSLLRIRSSMESWFPELTWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNNINYGKNNNNYRFLSELEQLYHQGGADHLATQEKTHQLHKQDKMDHHPLEEGDSGKLDPPLTKQNHDAAAVEKNQGRKRKRPGRFEMFKGFCESIVHKMMAQQEEMHNKLLEDMMKRDEEKFTREEAWKKQEMEKMNKELEMMAREQAIAGDRQTNIIQILNKFSVTPASNKSLKVVTNGSNLKSHISQNPNPSQNIPATPATENPTSSVAQDTLQLITNPSTSSSSAQVPQPNPSSSSLNSQNNINPIERNSVLNKSLSSNVGEKDDVGRRWPKDEVLALINLRCSSVSNNSSSNEEKEGNKVPLWERISQGMSELGYRRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSSLYNEGKLVLQSERPESHTDNQAENLEQVQADQTRAESSSQVGSGGFSVQQQVDHGGEKTLMQVPSLDFDQF* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1579 590 Coils Coil 258 278 - -
Vra8g1579 590 MobiDBLite consensus disorder prediction 190 214 - -
Vra8g1579 590 Gene3D - 430 496 - -
Vra8g1579 590 Gene3D - 101 157 - -
Vra8g1579 590 MobiDBLite consensus disorder prediction 339 403 - -
Vra8g1579 590 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 13 580 - -
Vra8g1579 590 ProSiteProfiles Myb-like domain profile. 100 152 IPR001005 -
Vra8g1579 590 Pfam Myb/SANT-like DNA-binding domain 428 519 IPR044822 -
Vra8g1579 590 Pfam Myb/SANT-like DNA-binding domain 99 177 IPR044822 -
Vra8g1579 590 CDD GT1 428 498 - -
Vra8g1579 590 MobiDBLite consensus disorder prediction 547 575 - -
Vra8g1579 590 ProSiteProfiles Myb-like domain profile. 429 491 IPR001005 -
Vra8g1579 590 MobiDBLite consensus disorder prediction 547 590 - -
Vra8g1579 590 MobiDBLite consensus disorder prediction 190 239 - -
Vra8g1579 590 PANTHER - 13 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1579 Vra-Chr8 32834050 32837118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1579 1 523 Trihelix Transcription Factor Family AT5G28300 41.256 3.20e-103 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra8g1579 Myb_DNA-bind_4 7.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1579 - - ccaj:109795059 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1579 8 32834050 32837118 Vra8g1579 8 32834050 32837118 ECH
Vra10g0647 10 12338916 12341271 Vra8g1579 8 32834050 32837118 PCT