Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1571 ATGAATGGGGTCACACACCTTGAACCAGATGACTCTGAGTTTGTTGAAGTTGATCCAACTGGCAGATATGGCAGATACAATGAAATCCTCGGAAAAGGAGCTTCAAAGACAGTATATAGGGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTGTATGATTTTCTGCAAAGTCCTGAAGATCTTGAGAGGCTTTATTGTGAAATTCATCTCCTGAAAACATTGAAGCACAGGAACATTATGAAATTCTACACTTCTTGGGTTGATACTGCGAATAGGAATATCAACTTCGTGACTGAAATGTTCACCTCCGGTACACTTAGACAGTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCTTGAGTGGACTTCTCTATCTTCACAGTCACGATCCGCCTGTGATCCATAGAGATCTAAAATGTGATAACATATTTGTCAATGGAAACCAAGGGGAAGTGAAGATTGGGGATCTTGGTTTGGCAGCAATTCTCCGGAAATCTCATGCAGCTCATTGTGTAGGGACGCCAGAGTTCATGGCCCCTGAAGTATATGAAGAGGCATATAATGAGCTAGTTGACATCTATTCCTTTGGGATGTGCATACTAGAGATGGTCACATTTGAATATCCTTATAGTGAATGTACTCATCCGGCTCAAATCTATAAGAAAGTTGTTTCTGGGAAAAAGCCAGATGCTTTATATAGAGTGAAGGATCCGGAGGTGCGACAATTTGTTGAAAAATGCTTGGCCACGGTGTCTCTTAGGCTTTCTGCAAGGGAGCTTCTAGATGATCCATTTCTTCGAATTGATGATTATGAATATGATACGAGAACTGTAGAAAATGGAGAATTGGATGAATTTGGTCCTCTCATCAGACAGCCATTCTTTGATCTTCATCGAAGCTACAGTAACTTCAGTAATGAATACTCAAATGGCTTTGGGTATGAAGGAGACTGGTGTCCTCATCCGGCTGAGATTGAACCAAGTGGAATTGAACTTTTTGAGTACCATGATGATGAACCCTCTGAAGATGTTGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGGCATCTTTTTGAGACTAAGAATTGCTGATAAAGAAGGTCGCATCCGAAATATTTATTTCCCATTTGACATAGAGACGGACACAGCAATAAGTGTGGCAACTGAAATGGTTGCAGAGCTGGACATTACTGATCAGGATGTTACCAGAATAGCTGATATGATTGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAGACCGGGACCAGGAATTGACGAAACTCCCCGTTTTGCAAATCAAGGTTTCTGTCACAATTGTGTATCTAATCATACTTCTAGCGGCTCTTTTTTGGATTTTCTCTCACACAATCCAGGTGACAAGAACCTGCAACTAGGGTGTTGTAGGCATGGATGCGCTTCAATGCATGGGCGGTTTGAGGAGATTACCTTCCAATCTGAAGAGTATGACAACCATGCCAGAGGGGATCTGAACATATCAAGCCAGTTAGATAGCTTGCAGTATCAGGAGTTATGGAATCAGCACGAAAGTCGTGAACTGAGTCCAGTAGAGTCTGATCAAAGCCATTCTGATGAACAATTCGAACAATTAGATAAACTACTTCCAGCTAAGGATAAAGAACATGATGTTTGGGAAAACAAGGTTTCATTCAGTGCTGCAAATTCTCGAAGAAATTTATCTGGAAGTCATGACTTCTCTACTATCCAATCTGCCTACTGTGACCTAGGAGATGACTATGAGAAAGAGATCCAAAAGGAACTCAGATGGCTAAGAGCCAAGTACCAAATGGAATTAAGGGATCATAAGGACCGACAGTTTGAGCAATCTTCACACAGTACTGACAAAGAGCACAAAACAGAAAATGGCTTATTGTCAACTTCAGTGACAGAAACATCATTAAAAGAAGGTAACAATGGGACTCAGATGAAACCTCCTACTAATAAGTGGCATTATGATTCTAGTAACCACCCTCATGTCCATGAAAGCAGCCCCAATTCGGACACCCAAAGGGCCCAAAATTGTGTGGCGACAGAATCCCCTGGCAAAGGTATGGTTACTGCAAAGAGTTTTTATACTGGCTCATTGCTTCCACACTCTCTGCACAGGACAGTTTCCCTACCAGTTGATGCAGTTGATATATAA 2214 0.4169 MNGVTHLEPDDSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILSGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVVSGKKPDALYRVKDPEVRQFVEKCLATVSLRLSARELLDDPFLRIDDYEYDTRTVENGELDEFGPLIRQPFFDLHRSYSNFSNEYSNGFGYEGDWCPHPAEIEPSGIELFEYHDDEPSEDVDISIKGKRKDDGGIFLRLRIADKEGRIRNIYFPFDIETDTAISVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIDETPRFANQGFCHNCVSNHTSSGSFLDFLSHNPGDKNLQLGCCRHGCASMHGRFEEITFQSEEYDNHARGDLNISSQLDSLQYQELWNQHESRELSPVESDQSHSDEQFEQLDKLLPAKDKEHDVWENKVSFSAANSRRNLSGSHDFSTIQSAYCDLGDDYEKEIQKELRWLRAKYQMELRDHKDRQFEQSSHSTDKEHKTENGLLSTSVTETSLKEGNNGTQMKPPTNKWHYDSSNHPHVHESSPNSDTQRAQNCVATESPGKGMVTAKSFYTGSLLPHSLHRTVSLPVDAVDI* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1571 737 CDD STKc_WNK 22 281 - -
Vra8g1571 737 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 726 - -
Vra8g1571 737 MobiDBLite consensus disorder prediction 626 704 - -
Vra8g1571 737 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1571 737 Gene3D - 371 436 - -
Vra8g1571 737 MobiDBLite consensus disorder prediction 646 700 - -
Vra8g1571 737 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Vra8g1571 737 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Vra8g1571 737 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 726 - -
Vra8g1571 737 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Vra8g1571 737 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 374 428 IPR024678 GO:0004674|GO:0005524
Vra8g1571 737 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1571 737 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1571 737 MobiDBLite consensus disorder prediction 626 645 - -
Vra8g1571 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1571 Vra-Chr8 32763897 32767621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1571 127 736 MAP Kinase Kinase Kinase AT3G04910 53.846 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vra8g1571 Pkinase 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1571 K08867 - gmx:100775959 1407.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1571 8 32763897 32767621 Vra8g1571 8 32763897 32767621 ECH
Vra10g0641 10 12275956 12279672 Vra8g1571 8 32763897 32767621 PCT