Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1565 ATGCTTTCCCCGTTGGTTTCTTGGTTCTTGTCTCCTTCCTCCTCCTCTTCCTCTTCCGAAGAAGAACAAAACCTTGACATTAACACTCATGATCACACTAAGCATCAAAACTTCAATACACAAGATGATGATAATGACCAATATCTTAGCTCATGCGATGTGGATGAAACCATTCCCGTTGCTCTTGCCGTTCCCAGTGCCACCCCTGCCGTGACGGTGGCCTTTCCGGCCGACGATGAAAGAAGCACGGTTCCCGGCACCACCGCCACCGTCACTGCCACCACATTTGTAACACGCTCAAAAGGGCAGTGCTCCAACAAGTATTCGGGCATTGTGAGACAATATCAGAGACTGTGGACGAAGCAGGACGAGAAGGAACTGCTAAAGGGATACCTTGATTACATTAAGCAGCATGGGAGGACAACCACCACCCTCCAGAACGACGTAGCCTCGTTGTATGATCACGTGAGGCCCAAACTGAACGTCGATTTCAACAAGAATCAGCTTGTTGAGAAGCTGCGTAGACTAAAGAGGAAGCACAAATTGGCTTTGAACAAAGGCACGGACAAGGAAGTTCCCTTTAGGAACCCCCAGGAACAGGCCATTTTCGAAATTTCAAACAAGATTTGGGGCAATGACACTGATAACCTATTAGACCAAGAGTATTTGGAAGGTGATGCGTCGGGACGCACTCCTGAAAGTCGTTACCTTGGGGGCATCGTTAAGGTGAAGGTTGATCAACTTGACAACAGTGATGAAATAGACGAGAGAGTGCCAAAGCGGTTGCGGCTAGATGATGCAGAAGATGTTAACAGAACAAATGAACATAACAATAGTGGCAGCCTGCAGGTCTTCATTGAGGAGACCATGAGGTCCTGTTTCTCCCCATTGCTGAAAGAAATGTTGGATGAAGTAAACCAAGAGCCACCTCCTGGGTTGGTTCCAATCCCATTGCCGCTATATCCTGAGGAAGTAGACCATGAGCAATGGAGAAAACGAGGGATTTTAGAGCTGGAGGTGTATTTGAAGAGGTTGGAGTTGTTGCAGGATCAGATCAAGGCTAGATTGGAGGAATTGCGATCTAGACGGGAGGTGTATGATAAAACTTCCCCAGGATGTGCAGAAACAGCTTGTGCTTTATCCAACACCAACAACTTCAACGAATAG 1167 0.473 MLSPLVSWFLSPSSSSSSSEEEQNLDINTHDHTKHQNFNTQDDDNDQYLSSCDVDETIPVALAVPSATPAVTVAFPADDERSTVPGTTATVTATTFVTRSKGQCSNKYSGIVRQYQRLWTKQDEKELLKGYLDYIKQHGRTTTTLQNDVASLYDHVRPKLNVDFNKNQLVEKLRRLKRKHKLALNKGTDKEVPFRNPQEQAIFEISNKIWGNDTDNLLDQEYLEGDASGRTPESRYLGGIVKVKVDQLDNSDEIDERVPKRLRLDDAEDVNRTNEHNNSGSLQVFIEETMRSCFSPLLKEMLDEVNQEPPPGLVPIPLPLYPEEVDHEQWRKRGILELEVYLKRLELLQDQIKARLEELRSRREVYDKTSPGCAETACALSNTNNFNE* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1565 388 PANTHER TRANSCRIPTION FACTOR GEBP FAMILY-RELATED 1 361 - -
Vra8g1565 388 PANTHER BNAANNG10740D PROTEIN-RELATED 1 361 IPR007592 GO:0006355
Vra8g1565 388 Coils Coil 166 186 - -
Vra8g1565 388 Coils Coil 338 369 - -
Vra8g1565 388 Pfam Protein of unknown function, DUF573 116 211 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1565 Vra-Chr8 32727645 32728811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1565 58 361 GeBP Transcription Factor Family AT5G28040 33.696 1.64e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vra8g1565 DUF573 1.9e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1565 - - var:108344158 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0638 10 12256345 12258267 Vra8g1565 8 32727645 32728811 PCT