Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1564 ATGGCATCCGATCTAAACGACACCGTTTTCCCTGAAGAAGATCTCGATGACGACGACGAAACTCAAGAAGACGAAGAGGAGGATGACGAAGACGACGATGTTTTAGACGATGAAGAAACCGAACCCTCTCATTCCGTCCTCGCAGCCATAACCCTCGCTGCCCCCGGTTCCGCCGTCTCCCAAACACTCGCCACCGCGTCTACGGCTATTGTTGTCGCCGATTCCTCGCCCAAGAGGCCGCGCACGGAGCAAGTCGAGGAGAAAAAGGCGCTTGACGATTCGCGGCGATTGTTCCAGCGCCTGTGGACGGACGAGGACGAAATTGGGCTCTTGCAGGGGTTTCTGGACTACACGACGCAGCGAGGATCCTCTCACCACAACGACACCGCTTTGTTCTACGACCAGATCAAGTCGAAGCTTCAACTCGGTTTCAACAAGAACCAGCTCGTCGAGAAGCTCCGAAGGCTGAAGAAGAAGTACCGCAACGTCCTCACCAAAATCAACGATGGCAAGGAATTCTCCTTCAAGAGCCCTCACGACAGAGCCACCTTCGAAATCTCGCGGAGGATCTGGAGCAACACCGCCCCAATCACCGGTCCCGTCGAAGACGACGACGAAATCAACCCTAACCCTAATCTTATTCCCAACCCTAATTTCAGCCATTCGGCGAAGACGTCGCTGTCGCGGAAGCGGTCGCGGTCTCGATCGGAGAAGCGCGAGTTCCACGACGGTTCAGCGTTGAATAAGGATACTAATTGTATTGGCAATAGTAACAATAACAGTAACAAAGATAATGAAAATTGTAACCATAGGCATAGCTTACAGAGCTTGATTGAAGAGACGGTGAGGAGTTGCGTGTCGCCGGTTTTGAAGGAGTTGGTGAGTGGTGGCATGGGATTTGGTTTTGGGGGAAGAGGGTTTGGAGTTGGAGGAGGGTTTCCATTGAATTCCTTGCAAATGCAAATGCAAATGCCAATGGCTTTGAGTTCATTGAATTTGGGCATTGGGGAAATGGTGATGGATGAGAAGTGGAGGAAGCAACAGATTTTGGAGCTGGAAGTCTATTCCAAGCGTTTGGAATTGTTGCAGAATGAGATCAAGGTTGCTCTCGAGGAGTTGAGATCCTCCGGTGGAGGATGA 1140 0.514 MASDLNDTVFPEEDLDDDDETQEDEEEDDEDDDVLDDEETEPSHSVLAAITLAAPGSAVSQTLATASTAIVVADSSPKRPRTEQVEEKKALDDSRRLFQRLWTDEDEIGLLQGFLDYTTQRGSSHHNDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNVLTKINDGKEFSFKSPHDRATFEISRRIWSNTAPITGPVEDDDEINPNPNLIPNPNFSHSAKTSLSRKRSRSRSEKREFHDGSALNKDTNCIGNSNNNSNKDNENCNHRHSLQSLIEETVRSCVSPVLKELVSGGMGFGFGGRGFGVGGGFPLNSLQMQMQMPMALSSLNLGIGEMVMDEKWRKQQILELEVYSKRLELLQNEIKVALEELRSSGGG* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1564 379 MobiDBLite consensus disorder prediction 249 264 - -
Vra8g1564 379 Coils Coil 146 166 - -
Vra8g1564 379 Pfam Protein of unknown function, DUF573 98 192 IPR007592 GO:0006355
Vra8g1564 379 MobiDBLite consensus disorder prediction 9 39 - -
Vra8g1564 379 PANTHER BNAANNG10740D PROTEIN 1 377 - -
Vra8g1564 379 Coils Coil 345 372 - -
Vra8g1564 379 MobiDBLite consensus disorder prediction 1 43 - -
Vra8g1564 379 MobiDBLite consensus disorder prediction 211 225 - -
Vra8g1564 379 PANTHER BNAANNG10740D PROTEIN-RELATED 1 377 IPR007592 GO:0006355
Vra8g1564 379 MobiDBLite consensus disorder prediction 195 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1564 Vra-Chr8 32724414 32725730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1564 1 379 GeBP Transcription Factor Family AT5G28040 43.519 3.85e-88 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vra8g1564 DUF573 1.4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1564 - - gsj:114372132 437.958