Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1554 ATGCCTGTTCCCAACAGCGAAGAGCAAGTTCTGTTTGCTTTGGAAAATGCAAGTGAGGTTTCAAAGTCACCCTCGTTGGATTTGAACCCAGATTCAGATTCAGTTGATGGGTCCCCACCTGTTTCCACCGTTTACACTGATGTGGGTGTCGTGCCAGAACACCAAAAGAACGAGCTTGAGCACTTTATATCCAATTTAGAAAGAGAAATAGAGGAGTTGAGGGTCAAGCAGAAGAAATTGGATAAAAAGCGTAGAGAAGCACTGAGCAAGATATTGGACATCAAAGGGAGCATTCGAGTATTTTGTAGAATTCGACCAAATCTGGTAACGGAGAAGAGAAGAATTTCTGAACCGGTATCAGCTGGACCAGAAAAAATTCGGGTTAAGTGGGGAGGAACAAAGAAAGATTTTGAGTTTGATAAAGTTTTTACTCAAGAAACAAGCCAAGAAAGTGTTTTTGTTGAGGTTGAGCCAATTCTGAGATCTGCAATGGACGGGCACAATGTATGTGTGTTTGCTTACGGTCAAACAGGCACAGGCAAGACATTCACCATGGATGGTACAAACGAGCAACCTGGGATCATTCCGCGTGCTCTTGAAGAGCTCTTTCATCAAGCCTCTTTGGATAGCTCATCTGCTTTCACCTTTTCGATGAGCATGTTAGAAGTTTATATGGGCAATCTCAGGGATTTGCTAGCTCCAAAACCGTCTGGTAGACCACACGAACAACCTATGACGAAGTGCAATCTCAACATCCAAACCGATCCAAAGGGGTTGATTGAAATTGAGGGTCTCTCGGAAGTTCAAATAAGTGATTATGCTAAAGCAAAATGGTGGTACAACAAGGGCAGAAGGTTCAGATCCACCTCGTGGACTAATGTGAATGAAGCATCAAGCAGGTCACACTGCTTAACGAGGATAAGCATATTTCGACGTGGGGATGCTTTGGAAGCTAAAAGTGAAGTAAGCAAACTGTGGATGGTTGATCTTGGAGGCAGCGAACGGTTGCTTAAAACTGGAGCCAAAGGACTGACACTGGATGAGGGCAGAGCCATTAATCTTTCTCTTTCAGCTTTAGCTGATGTTGTTGCAGCTTTGAAAAGGAAGAGGGGCCATGTGCCTTACAGGAATAGCAAGCTGACTCAATTACTCAAAGATTCTCTTGGGTATGGCTCAAAGGTTTTGATGCTCGTGCATATAAGCCCATCTGAAGAAGATGTCTGTGAGACAATTTGCTCCTTGAACTTTGCAAAGAGAGCGAGAGCAATAGAGTCCAACAAAGAAGTGTCCGTGGAAGTGAAGAAGCAAAGGGAGAAGAAGATTATGGAGCTAGAGGAAGACATAAAGGAAGCTGAAAAACAACGCCAGAATTTAAGGGAAGAAACAGAGAAGATTGAGTTGAAGTTAAATGATAGTAAAAAGCTCTTATCAATAAGAGATAGTCTTGTGGAAAGTGATGACATGAAAGCCTCAATTAGTCCCAAAGATGATGTGAAAGAGGTGATTGAAACTCCCAAAGCATCTAAGAAGCCCATCAAAAGAAACTTCTCCAACTCAATGCCTCGATTCATGACTTCAACAGTGGCAAGTCGCCAAAGGCAAAGTGCTGCAGAGCGAGACATTGGCACTGTGAAATTGAAAAGCTATAGATCAACAATGGTGTCGAGAAGCTCCATCCATTTTTCGTATTCCCAATCGTTGAGTTATTCAGATATCCGCATCAAAGCATTGCTGCGAAATTCAAATGGAAAATCTGGGCATGGTGAAGCAGATAGTGTTCCAATTCCAGAGCCTGTTCTCACAGAAAGGCCTAAATGCAATGATTTGGAATCAAAAGTGACAACCCCTCGAAGCTTGAGAGTTTCGGTGGGTCGTCACAGAAGAAGGATGTCTGATCTGATATAA 1905 0.4294 MPVPNSEEQVLFALENASEVSKSPSLDLNPDSDSVDGSPPVSTVYTDVGVVPEHQKNELEHFISNLEREIEELRVKQKKLDKKRREALSKILDIKGSIRVFCRIRPNLVTEKRRISEPVSAGPEKIRVKWGGTKKDFEFDKVFTQETSQESVFVEVEPILRSAMDGHNVCVFAYGQTGTGKTFTMDGTNEQPGIIPRALEELFHQASLDSSSAFTFSMSMLEVYMGNLRDLLAPKPSGRPHEQPMTKCNLNIQTDPKGLIEIEGLSEVQISDYAKAKWWYNKGRRFRSTSWTNVNEASSRSHCLTRISIFRRGDALEAKSEVSKLWMVDLGGSERLLKTGAKGLTLDEGRAINLSLSALADVVAALKRKRGHVPYRNSKLTQLLKDSLGYGSKVLMLVHISPSEEDVCETICSLNFAKRARAIESNKEVSVEVKKQREKKIMELEEDIKEAEKQRQNLREETEKIELKLNDSKKLLSIRDSLVESDDMKASISPKDDVKEVIETPKASKKPIKRNFSNSMPRFMTSTVASRQRQSAAERDIGTVKLKSYRSTMVSRSSIHFSYSQSLSYSDIRIKALLRNSNGKSGHGEADSVPIPEPVLTERPKCNDLESKVTTPRSLRVSVGRHRRRMSDLI* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1554 634 PANTHER KINESIN-LIKE PROTEIN KLP-3 1 628 - -
Vra8g1554 634 MobiDBLite consensus disorder prediction 581 602 - -
Vra8g1554 634 PANTHER KINESIN-LIKE PROTEIN KIN-14D ISOFORM X1 1 628 - -
Vra8g1554 634 MobiDBLite consensus disorder prediction 18 41 - -
Vra8g1554 634 Pfam Kinesin motor domain 125 423 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1554 634 SMART kinesin_4 95 431 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1554 634 Coils Coil 434 475 - -
Vra8g1554 634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 463 IPR027417 -
Vra8g1554 634 Gene3D Kinesin motor domain 92 469 IPR036961 -
Vra8g1554 634 PRINTS Kinesin heavy chain signature 166 187 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1554 634 PRINTS Kinesin heavy chain signature 292 309 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1554 634 PRINTS Kinesin heavy chain signature 324 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1554 634 PRINTS Kinesin heavy chain signature 373 394 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1554 634 Coils Coil 56 90 - -
Vra8g1554 634 ProSiteProfiles Kinesin motor domain profile. 97 423 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1554 Vra-Chr8 32580188 32584170 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1554 69 423 Calmodulin-binding Proteins AT5G65930 40.443 3.54e-71 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1554 - - gmx:100785581 1073.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1554 8 32580188 32584170 Vra8g1554 8 32580188 32584170 ECH