Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1553 ATGGGGTGTATAATTGGCAAAGAAGTGTCATCGGGAATAATCTCCGAGGTGAAAGAGGAGAAGAGTGTGAGTGTTGAATCCAACGAGAAAGTTGATGAAGTGGCCACAAGCAGAGCTGAGGAGAACGTGGGAGAGGCTCTGAATGGTGAGAAGGAGAAAAAGAAGGAGAAGGAAGAGAATGGTGGTGGCGATGGAGTCCGGGGAACGAAGGGTGACAGAAGAAGGTCAAAGCCAAATCCAAGGTTAAGTAATCCACCGAAGCATTTGCAGGGGGAGCAAGTAGCAGCTGGGTGGCCACCTTGGCTAACAGCAGTGTGTGGTGAAGCCCTTAGTGGGTGGATTCCGCGAAAGGCTGACACATTTGAGAAAATTGATAAGATCGGTCAAGGAACTTATAGTAATGTATACAAAGCTAAAGACACATTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGTTTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCCAGAGAGATTCTTATTTTGAGAAGATTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCCAGAATGTCCTTGAGTTTGTACCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCTGACATAAAATTTACAGAGCCACAGGTTAAATGTTACACAAATCAACTGCTATCAGGACTTGAGCACTGCCATAGTCGAAACGTACTTCACCGTGATATAAAAGGATCAAATCTTCTTATTAACGATGAAGGGATACTTAAAATTGCTGACTTTGGCCTTGCATCTTTCTTTGATCCAGACCGCAGGCATCCCATGACTAGTCGTGTAGTTACCCTTTGGTACCGCCCCCTTGAGTTGCTTCTTGGTGCCACAGAATATGGTGTGGCCATCGACCTTTGGAGTGTTGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAACCTATTATGCCTGGACGTACAGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGATCACCTTCTGATGAGTATTGGAAGAAGTTAAAGATGCCTAATGCTACCTTGTTTAAACCTCGACAGCCATACAGGAGGTGTATAAGAGAGACATTTAAAGATTTCCCACCTTCATCCTTTCCCCTTATCGAGACTCTTCTTGCAATTGATCCAGCAGAACGAAAGAGTGCCTCAGATGCTCTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCATGTGATCCTCTTAGTCTTCCAAAATATCCCCCAACAAAGGAAATGGATGCTAAACGACGGGATGATGAAGCAAGGAGATCAAGAGCTGCAGGCAAAACTGGTGTTGATGGTCCAAAGAAGCATCGGATTCGTGATCGTGCTGCCAAAGCTGCTCCTGCTCCAGAAGCCAATGCTGAGCTTCAATCCAATATGGATAGAAGGAGATTAATCAGTCATGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCACCGCATGAAGATGGACAACTTGGCTTTCCTTTGGGATCTTCTAATCACATCGATCCAGATATTATTCCTTCCGACATCTCTTTGGGTTCAACCTCGTACACCTATTCAAAGGAACCATTCCAAGCTTGGTCAGGTCCAATTGGTAATCCTGCCAGCATTAGTAAACAGAAGAAACACACTACTGGTGATGATGCATTGGATTTGTCAAAATCATACAAGGGAACTCTCAAGCATAAAGTTAAAGGAAAGAAAATCCCAGCCTAG 1749 0.4374 MGCIIGKEVSSGIISEVKEEKSVSVESNEKVDEVATSRAEENVGEALNGEKEKKKEKEENGGGDGVRGTKGDRRRSKPNPRLSNPPKHLQGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYTNQLLSGLEHCHSRNVLHRDIKGSNLLINDEGILKIADFGLASFFDPDRRHPMTSRVVTLWYRPLELLLGATEYGVAIDLWSVGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKLKMPNATLFKPRQPYRRCIRETFKDFPPSSFPLIETLLAIDPAERKSASDALRSEFFTTEPYACDPLSLPKYPPTKEMDAKRRDDEARRSRAAGKTGVDGPKKHRIRDRAAKAAPAPEANAELQSNMDRRRLISHANAKSKSEKFPPPHEDGQLGFPLGSSNHIDPDIIPSDISLGSTSYTYSKEPFQAWSGPIGNPASISKQKKHTTGDDALDLSKSYKGTLKHKVKGKKIPA* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1553 582 SUPERFAMILY Protein kinase-like (PK-like) 116 411 IPR011009 -
Vra8g1553 582 PANTHER CELL DIVISION PROTEIN KINASE 44 554 - -
Vra8g1553 582 SMART serkin_6 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1553 582 MobiDBLite consensus disorder prediction 415 510 - -
Vra8g1553 582 MobiDBLite consensus disorder prediction 423 460 - -
Vra8g1553 582 PANTHER OS01G0367700 PROTEIN 44 554 - -
Vra8g1553 582 ProSiteProfiles Protein kinase domain profile. 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1553 582 MobiDBLite consensus disorder prediction 536 562 - -
Vra8g1553 582 MobiDBLite consensus disorder prediction 18 79 - -
Vra8g1553 582 CDD STKc_CDK9_like 121 405 - -
Vra8g1553 582 Pfam Protein kinase domain 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1553 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Vra8g1553 582 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Vra8g1553 582 Gene3D Phosphorylase Kinase; domain 1 108 203 - -
Vra8g1553 582 MobiDBLite consensus disorder prediction 472 496 - -
Vra8g1553 582 Gene3D Transferase(Phosphotransferase) domain 1 204 444 - -
Vra8g1553 582 MobiDBLite consensus disorder prediction 18 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1553 Vra-Chr8 32537219 32545830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1553 113 443 Core Cell Cycle Gene Families AT5G10270 51.873 3.46e-118 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vra8g1553 Pkinase 9.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1553 K08819 - gmx:100817289 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0617 10 12062423 12066828 Vra8g1553 8 32537219 32545830 ECH
Vra8g1553 8 32537219 32545830 Vra8g1553 8 32537219 32545830 ECH
Vra10g0617 10 12062423 12066828 Vra8g1553 8 32537219 32545830 PCT