Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1552 ATGGTCTTTGAAATCAGTTCTGTTGTTTCAAAGTTGCAAATGGTATCCACTTCGGACCATGCCTCCGTTGTCTCCATGAACTTATTTGTGGCTCTTCTTTGTGCTTGTATTGTCATTGGCCATCTTCTTGAGGAGAACCGGTGGATGAATGAGTCTATCACTGCCCTTTTGATTGGTATTTCCACTGGCGTAGTCATTTTGCTGCTTAGTGGTGGTAAAAGCTCACATATTCTTGTTTTCAGTGAAGATCTTTTCTTCATATACCTTCTGCCGCCTATAATATTCAATGCTGGGTTTCAGGTGAAAAAGAAGCAGTTTTTTGTTAACTTCATGACCATCATATTGTTTGGTGCTATTGGTACATTAATATCTTGTGCGGTCATAACTTTGGGTGCGTCACAAATTTTTGAGAAGTTGGATATTGGTCCACTGGAATTAGGGGATTACCTAGCAATTGGTGCAATATTTGCTGCGACAGATTCTGTTTGCACATTGCAGGTGCTAAATCAGGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAAGCTTTGACCTCAACCACATAGACTCTTCAATAGCTTTGCACTTTTTGGGCAATTTCTTGTATTTATTTGTCGCAAGCACAATGCTTGGAGTGTTGACAGGTCTACTCAGTGCTTATATTATCAAAAAGCTGTATATTGGAAGGCACTCTACAGATCGTGAGGTTGCTCTTATGATGTTAATGGCGTACCTATCCTACATGCTAGCTGAATTATGCTATCTAAGTGGCATCCTCACTGTATTCTTTTGTGGGATTGTTATGTCTCATTATACCTGGCATAATGTGACTGAGAGTTCAAGAATCACTACCAAGCATTCTTTTGCAACCTTGTCATTTGTTGCCGAGATCTTTATCTTCCTTTATGTGGGTATGGATGCCTTGGACATTGAAAAATGGAAATTCGTCAGTGATAGTCCTGGAACATCTATTGCAGCTAGTTCAGTATTGTTGGGCCTAGTTCTTGTTGGAAGAGCAGCCTTTGTTTTCCCCTTATCCTTTCTATCCAACTTGGCTAAAAAATCACCAAATGAGAAAATTAGCTTCAGACAGCAAGTAATTATTTGGTGGGCTGGTCTTATGAGGGGTGCTGTTTCAATGGCACTTGCATATAATCAGTTCACCATGTCGGGGCATACTTCACTGAGAAGCAATGCAGTCATGATCACTAGCACCATCACTGTTGTACTTTTCAGCACGGTGGTCTTTGGTTTGATGACTAAGCCACTCATACGGCTTTTACTACCTCATACTCCAAATCATAAAGAAATAAACATCGTGATAGCCACAGATGCATCTACTCCAAAATCAGCCACTGTCCCACTTCTTGGGAGTGCCCAAGACTCTGAAGTCGATATTGATTCAATCCATCGACCAAGCAGCATCCGCGCATTGCTTAGAACTCCAACACACACTGTTCATCGTTTGTGGCGTAAGTTCGATGATGCATTCATGCGTCCTGTTTTCGGTGGAAGGGGTTTTGTTCCTGTAGAACCTGGCTCTCCATCTGAACGTAATGGTCATCAATGGCGTTGA 1629 0.4168 MVFEISSVVSKLQMVSTSDHASVVSMNLFVALLCACIVIGHLLEENRWMNESITALLIGISTGVVILLLSGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTIILFGAIGTLISCAVITLGASQIFEKLDIGPLELGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLNHIDSSIALHFLGNFLYLFVASTMLGVLTGLLSAYIIKKLYIGRHSTDREVALMMLMAYLSYMLAELCYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHSFATLSFVAEIFIFLYVGMDALDIEKWKFVSDSPGTSIAASSVLLGLVLVGRAAFVFPLSFLSNLAKKSPNEKISFRQQVIIWWAGLMRGAVSMALAYNQFTMSGHTSLRSNAVMITSTITVVLFSTVVFGLMTKPLIRLLLPHTPNHKEINIVIATDASTPKSATVPLLGSAQDSEVDIDSIHRPSSIRALLRTPTHTVHRLWRKFDDAFMRPVFGGRGFVPVEPGSPSERNGHQWR* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1552 542 Pfam Sodium/hydrogen exchanger family 30 442 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vra8g1552 542 PANTHER SODIUM/HYDROGEN EXCHANGER 7 541 IPR018422 GO:0006812|GO:0015299|GO:0016021
Vra8g1552 542 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 25 452 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra8g1552 542 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra8g1552 542 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra8g1552 542 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra8g1552 542 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra8g1552 542 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 541 - -
Vra8g1552 542 Gene3D - 146 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1552 Vra-Chr8 32500559 32507100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1552 6 540 Antiporters AT3G05030 77.180 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1552 - - gmx:100816746 968.378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1552 8 32500559 32507100 Vra8g1552 8 32500559 32507100 ECH
Vra10g0613 10 12008488 12013442 Vra8g1552 8 32500559 32507100 PCT