Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1547 ATGGAGTGCAACAAGGATGAGGCGGTGAGGGCTAGGCAAATGGCCGAAGCTAGAATGCAAAGTGGTGAATTTGTGGAGGCACTCAGATTGGCTACCAAGGCTAAAAAGCTGTATGCTGATGTTGAAAACATTACTCAGATTCTTACCATCTGTGAGGTTCACAATGCTGCAAATAAAAAGGTCTCTGCCACTGAAATGGACTGGTATGCGATACTTCAGATCGAAAGATTTGCTGATGAAGCAATCATAAAGAAACAGTACAGGAGGCTCGCACTGCTACTTCATCCTGACAAGAACAAGTATGCTGGTGCAGAAGCTGCTTTCAAGTTGATTGGGCAAGCCAATGGGGTCTTGAGTGACCAAGAAAAACGTTCTTTGTATGACAGCCGGTTCGGAATCTCTGTGAGAGGTGCTGCGAAGAAATCCACTGCAAAACGTGGTGCAGAAAAATGCCAGAGAAGTTCTGAATCACAACGTAATTCACATGGGAATGTGTTCACTGCAAAGCGTGATGAACATGCAACAAATTATCAAAAGAATTCTTATCCTAACTCCGCTGATTCCAACAACCAAGCTGGGCCGACGACATTCTGGACAACTTGCCCACATTGTGGTTTTCAGTTCGAGTACTTAATACGATATGCGTATACGAACTTATTATGTATGCAGTGCTTTAAATCATATAAAGGTAATGTTTTTAGTTTTGGTGCTCCACCGCCACAGCCAAAGTTTACTTCAGTAAATATCCCGAAAGAGGCTCCAGTTCCTGGTCCCCCAAAACCAGATTCAGAAAGCCATGTTCAGAAACCCTTTGGTAGAGAACGTACTGCCAGGTTTGTGCGGTCAGATACTACATCTATGAAAAAATGTGCTGCTGGAGTTGGTGCTCATTGTGAAAAGAGTAAAGATGGCTCTGTTCCTGCATCCAAAGTCATGGAGTCACAATGCTCTAAAAATGTTGGAAGTAAGAGGGTAAGACAGTCAGCACCAGATTCAGGAAAAAGCTTCAAAGATAGAAACAGTGGTGAGATGAGAGATGCTAATGTTCGAGAAAATGATATTGATCATTCAAGAGCTGGTGCAAGGAGATCTTCAAGGAAAAAACAACGTGTTTCATATACGGAAACCTCTGAAGATGAAGATCTTGAATTTCCTTCCAAATCGCCACGACAAAATGAACCACTTAAAACCGATGACGTTGAGAATAAGACTGTTCCGTCAAGTAATGGAGCGTCCAACAGCAACAATCCAGCTACTTCAACTGCTGGTGTGGCTGATCAGAACACGGAGAATGTATCCGAGTCAAAAGAGCATAACTGCTCTTCACCGGATTCAAATATTCCTTCTAGTCCAGACATCCTTTCTTGTTTTGACGCAGAATTCAATGATTTCGAAATGGACAAGGAGGCGGATCGCTTTGCTGTTAATCAAATATGGGCAGTGTATGATGATAGCGGTGATGCGATGCCAAGATTTTATGCTATAGTCAAGAAAGTGTTTTCCCCTTTCATGTTGCAGATTACTTGGTTGGAGGCTGATCCACATTACAAAGAAGACCTTGATTGGCAGGATGCAGATTTGCCTATTGCCTGCGGTAGGTTCAGACTTGGCAGTTCTCAGAAAACTACAGATCGTACTATGTTCTCTCATCAGGTGCGGTGTGTAAAAGAAACTGGCAAAGGTTCTTATCTGGTATATCCCCGTAAAGGAGAAACATGGGCAATTTTCAGAGATTGGGATATAAAATGGAGTTCTGATCCAAATAAACATTTAGCGTATGACTATGACTACGTGGAGATCTTATCAGATTTCTCTGATAACGTGGTCATCGCTGTTGCCTATCTGGGCAAAGTGAAAGGATTTGTTAGCCTCTTTCAGCAAACGTCGGAGAATGGAGCGGTCAATTTTTATGTCCGGCCTCACGAGCTTTATAGGTTCTCGCATCAAATTCCTTCTTATAAGATGTCTGGTAATGAGAGGGAGGGTGTTCCAAGAGGATCTTTTGAATTTGATCCTGCTGCCTTGCCTTCTAATCTCTTTGAAGTTGGTGATTCGGGTAATTTGAAGATGAATAGCTGA 2079 0.4262 MECNKDEAVRARQMAEARMQSGEFVEALRLATKAKKLYADVENITQILTICEVHNAANKKVSATEMDWYAILQIERFADEAIIKKQYRRLALLLHPDKNKYAGAEAAFKLIGQANGVLSDQEKRSLYDSRFGISVRGAAKKSTAKRGAEKCQRSSESQRNSHGNVFTAKRDEHATNYQKNSYPNSADSNNQAGPTTFWTTCPHCGFQFEYLIRYAYTNLLCMQCFKSYKGNVFSFGAPPPQPKFTSVNIPKEAPVPGPPKPDSESHVQKPFGRERTARFVRSDTTSMKKCAAGVGAHCEKSKDGSVPASKVMESQCSKNVGSKRVRQSAPDSGKSFKDRNSGEMRDANVRENDIDHSRAGARRSSRKKQRVSYTETSEDEDLEFPSKSPRQNEPLKTDDVENKTVPSSNGASNSNNPATSTAGVADQNTENVSESKEHNCSSPDSNIPSSPDILSCFDAEFNDFEMDKEADRFAVNQIWAVYDDSGDAMPRFYAIVKKVFSPFMLQITWLEADPHYKEDLDWQDADLPIACGRFRLGSSQKTTDRTMFSHQVRCVKETGKGSYLVYPRKGETWAIFRDWDIKWSSDPNKHLAYDYDYVEILSDFSDNVVIAVAYLGKVKGFVSLFQQTSENGAVNFYVRPHELYRFSHQIPSYKMSGNEREGVPRGSFEFDPAALPSNLFEVGDSGNLKMNS* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1547 692 MobiDBLite consensus disorder prediction 250 284 - -
Vra8g1547 692 MobiDBLite consensus disorder prediction 368 400 - -
Vra8g1547 692 SUPERFAMILY Chaperone J-domain 62 130 IPR036869 -
Vra8g1547 692 MobiDBLite consensus disorder prediction 266 282 - -
Vra8g1547 692 MobiDBLite consensus disorder prediction 401 449 - -
Vra8g1547 692 MobiDBLite consensus disorder prediction 144 190 - -
Vra8g1547 692 CDD DnaJ 67 120 IPR001623 -
Vra8g1547 692 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vra8g1547 692 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vra8g1547 692 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vra8g1547 692 PRINTS DnaJ domain signature 123 142 IPR001623 -
Vra8g1547 692 MobiDBLite consensus disorder prediction 330 360 - -
Vra8g1547 692 MobiDBLite consensus disorder prediction 298 449 - -
Vra8g1547 692 PANTHER - 1 688 - -
Vra8g1547 692 Gene3D DnaJ domain 50 145 IPR036869 -
Vra8g1547 692 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vra8g1547 692 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 688 - -
Vra8g1547 692 Pfam DnaJ domain 67 128 IPR001623 -
Vra8g1547 692 SMART dnaj_3 66 123 IPR001623 -
Vra8g1547 692 MobiDBLite consensus disorder prediction 308 329 - -
Vra8g1547 692 Pfam Domain of unknown function (DUF3444) 453 659 IPR024593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1547 Vra-Chr8 32458802 32461743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1547 47 230 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 31.720 4.80e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1547 - - gmx:102662460 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1547 8 32458802 32461743 Vra8g1547 8 32458802 32461743 ECH
Vra10g0606 10 11945307 11956965 Vra8g1547 8 32458802 32461743 PCT