Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1539 ATGGTTAAAGAAGATCTCTTTAAGGAAAACGAGAATGATGATTTTCAAATGGATCATGATATGGACCAGGAAAAAGACAATGAGACTAAATCGAAAAAGGTTTCGCTTTGGGATGCTTTAAATCATAAACCTGAAAAAAAAGATTTGTCTTGCTCATCTTCTGCTCATGACTTGAGGCATTTAGAATTGGAGAAAGAGAAAGAGAATGTGGCATCACCAAGAGGAGTCTTGGAAGTATACATGAAAGACTTTGATTCTCGAATATTTGCTAAACCGGAAAAAAGTTGTTCAAGCACAAGGGCACACTCTAACTGGACCAATTTTTTCAAACTTTTCAAGAAAAAATCTTTTAAGCGGCTAGGGACCCTCTCCAATATCAGTGTTCCAAAGATACCAAAATGGAAAAGCAGAAGTACTAGAGAAAATCACGCTTTAAGCAAGCTATGTAACTTCAACTCATCTTGGGTCACTTTTAGCCTTTCTGACCTCAGAAAAGCGACCAAAAATTTTCACAGTGAAAATATAATCGGAAGCGGTGGTTTTGCTGATGTTTACAAGGGGTGTCTCGAAGATGGACAATTAATAGCTGTGAAGAAATTGAATAAAGGAACCACAGAAGAAAAAACTGCGGGCTTTCTATCTGAGTTAGGCGTAATTGCTCACGTTGACCATCCTAATACTGCCAAGCTAGTTGGATGTTGTGTAGAAGGAGAAATGCATCTTGTCTTTGAACTATCTACACTAGGAAGTTTAGGATCTCTTCTTCATGGTTCAGATAAAAACAAACTAGATTGGAGTAAAAGGTATAAAATTGCTCTGGGAATAGCTGATGGTCTCCTCTATCTGCATGAGTGTTGTCACAGACGAATCATTCACAGAGATATTAAGGCAGAGAATATTCTAGTCACGGAGAATTTTGAGCCACAGATATGTGATTTTGGGCTTGCAAAGTGGTTACCTGAACAGTGGACTCACTATAATGTATCAAAATTTGAAGGCACATTTGGTTATTTTGCTCCTGAATATTTCATGCACGGAATAGTAGATGAAAAAACTGATGTTTATTCATTTGGGGTCCTGCTTTTGGAGATCATAACCGGCCGCCCAGCGGTGAATTATTTGCAGCAAAATATTGTGCTATGGGCAAAACCTTTGATTTCTGGCAATCAGACGAAGGAGCTTATTGATCCTTCACTCGGTGATGATTATGATAAAGGGCAGTTGGGTTGTGTAATTGTAACTGCATCGCTATGTATTGAACAGAGTCCTATCTTACGTCCCAGAATGAGACAGATTGTGACGCTATTAAGAGGGGAACAACGCGTTATAAAATCTACACGAGCAAGTGGAAGGAAGCTTTTGGAAAGAACGTACTCAGAAGAGCTCTTGGATGTGCAAGAATACAACTCAACAAAATTTCTAAGAGATCTCAAGCGGCATCAAGAAATTGCATTGAGTCTCGAGAACTAA 1470 0.3871 MVKEDLFKENENDDFQMDHDMDQEKDNETKSKKVSLWDALNHKPEKKDLSCSSSAHDLRHLELEKEKENVASPRGVLEVYMKDFDSRIFAKPEKSCSSTRAHSNWTNFFKLFKKKSFKRLGTLSNISVPKIPKWKSRSTRENHALSKLCNFNSSWVTFSLSDLRKATKNFHSENIIGSGGFADVYKGCLEDGQLIAVKKLNKGTTEEKTAGFLSELGVIAHVDHPNTAKLVGCCVEGEMHLVFELSTLGSLGSLLHGSDKNKLDWSKRYKIALGIADGLLYLHECCHRRIIHRDIKAENILVTENFEPQICDFGLAKWLPEQWTHYNVSKFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLEIITGRPAVNYLQQNIVLWAKPLISGNQTKELIDPSLGDDYDKGQLGCVIVTASLCIEQSPILRPRMRQIVTLLRGEQRVIKSTRASGRKLLERTYSEELLDVQEYNSTKFLRDLKRHQEIALSLEN* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1539 489 PANTHER OS08G0249100 PROTEIN 50 482 - -
Vra8g1539 489 ProSitePatterns Protein kinases ATP-binding region signature. 176 199 IPR017441 GO:0005524
Vra8g1539 489 SMART serkin_6 170 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1539 489 Gene3D Transferase(Phosphotransferase) domain 1 247 456 - -
Vra8g1539 489 SUPERFAMILY Protein kinase-like (PK-like) 146 436 IPR011009 -
Vra8g1539 489 MobiDBLite consensus disorder prediction 1 31 - -
Vra8g1539 489 Gene3D Phosphorylase Kinase; domain 1 131 244 - -
Vra8g1539 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Vra8g1539 489 Pfam Protein tyrosine and serine/threonine kinase 172 378 IPR001245 GO:0004672|GO:0006468
Vra8g1539 489 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 50 482 - -
Vra8g1539 489 ProSiteProfiles Protein kinase domain profile. 170 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1539 Vra-Chr8 32326935 32331106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1539 157 442 Receptor kinase-like Gene Family AT1G53440 44.027 4.71e-71 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vra8g1539 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1539 - - gmx:100781529 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0600 10 11879547 11885197 Vra8g1539 8 32326935 32331106 ECH
Vra8g1180 8 26931338 26935148 Vra8g1539 8 32326935 32331106 ECH
Vra10g1055 10 16290856 16294574 Vra8g1539 8 32326935 32331106 ECH
Vra8g1539 8 32326935 32331106 Vra8g1539 8 32326935 32331106 ECH
Vra10g0600 10 11879547 11885197 Vra8g1539 8 32326935 32331106 PCT