Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1532 ATGTGTTTGCCAGAGGGAGAGAGAGAGAGAGAGAGAGCCATGGCACTGGAAGCAGTGGTCTTTCCACAATCACAAGACCCATTTGGTGTGAAGGACTTCTACAACTGCACTTTCTTGTCTGCTACTTCACCTAACTGGGGGGACTATGAACACATCAACATCAACATCGATAAAGAAGAAGAACAAGGTTCTATCTCTACTTTTCTCGATAATAATAACAGCCAACCAGACAATTACCCTTATGGAGGAGATTGGACCAGCTCTTCATCCTCTATCTTACCCCACTTGAATGATCTTCAAGAAACCACACACCCCATTAACACCACTCATAGCTTCGATACCTTAACCACTCGTCCCAAGAGGCGCAGAGCCAAAAGCAGAAAGAACAAGGAAGAAATTGAGAACCAAAGAATGACTCACATTGCTGTCGAGCGCAATAGAAGAAAACAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTCATGCCGGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTCAAGGAGCTTGAGCAGAGGCTGCATTTTCTTGGTGCTCAGAAAGAAGGTGAGGGGAAATCTGATGCTGGTGGTGCAACGAACATGCCCTTTTCTGAGTTCTTCGCCTTTCCGCAGTATTCAACAAGTGGTGGTGGTGGTGGGTCTGATAATTCTGCAACCGTAGGTGAAGACGTGGGTGAAGTTAAGTCTGGCATTGCTGACATAGAAGTGACCATGGTTGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAGCGCCCCAAACAACTCTTGAAGCTGGTCTCTGGTTTGCATACTATGCGCCTTACAATCTTGCACCTAAATGTTACCACCACTGGTGAAGTTGTACTCTACTCTCTAAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCCGTGGATGATATTGCTGAAGCTGTGTACCAGACACTGGATAGGATTCAACAAGAGGCAGTGTTGAATTAA 1014 0.4448 MCLPEGERERERAMALEAVVFPQSQDPFGVKDFYNCTFLSATSPNWGDYEHININIDKEEEQGSISTFLDNNNSQPDNYPYGGDWTSSSSSILPHLNDLQETTHPINTTHSFDTLTTRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKEGEGKSDAGGATNMPFSEFFAFPQYSTSGGGGGSDNSATVGEDVGEVKSGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEVVLYSLSVKVEDDCKLGSVDDIAEAVYQTLDRIQQEAVLN* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1532 337 CDD bHLH_AtFAMA_like 138 210 - -
Vra8g1532 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 186 IPR011598 GO:0046983
Vra8g1532 337 Gene3D - 120 200 IPR036638 GO:0046983
Vra8g1532 337 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 337 - -
Vra8g1532 337 MobiDBLite consensus disorder prediction 103 131 - -
Vra8g1532 337 Pfam Helix-loop-helix DNA-binding domain 136 187 IPR011598 GO:0046983
Vra8g1532 337 SMART finulus 141 192 IPR011598 GO:0046983
Vra8g1532 337 PANTHER MAX DIMERIZATION, MAD 14 337 - -
Vra8g1532 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 198 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1532 Vra-Chr8 32274770 32277022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1532 14 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.101 1.80e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g1532 HLH 8.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1532 - - pvu:PHAVU_007G181900g 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1532 8 32274770 32277022 Vra8g1532 8 32274770 32277022 ECH
Vra10g0581 10 11693616 11695341 Vra8g1532 8 32274770 32277022 PCT