Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1531 ATGAAGAACTCAAATGGCTCTAGAGAAAATGGAGGAATTTACGTTTTTCTCCTCCTCATCCTCTTCATCGTTCCTCTCGCGGCTGCGCAATCTACGAACAATAACCAAAACGAATCGTATTACAACCGCTTCAGCCCTTCCATGGCCATCATAATCGTCATCCTCATCGCTGCGGTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCACTGCGCCGACTCCCCCTCCGCAAGCATCCGCAACCTCACCGGGGCCACCTCCCGCCCGCGCCGTGGCCTCGACCAGGCGGTCATCGACACTTTCCCCACGCTGGAGTACTCCGTGGTGAAGATCCACAAGCTTGGAAAGGGGACGCTGGAGTGCGCGGTGTGCTTAAACGAGTTCGAGGACACCGAAACGCTGCGTTTGATCCCCAAGTGTGATCACGCGTTTCACCCGGAGTGCATCGACGAGTGGCTCTCCTCCCACACTACCTGCCCCGTTTGCCGCGCTAACCTCGTCCCCGAGCCCGGGGACTCCGTCAGAGGAATTCCAGTTCTTAATGCTCCTAACGACATCGAGGCCCAATCCGAAGCCCAACCCGAGGCCCACAACAACGCCGTCGAGCCTCTTCCCGAACAACAGCAAGAGCCTAAGCTTCCGATTTCCTCCGAACCCCCTCAGGTGCTCAGCCTAAACCAGACGCTGAACCGGAACCGCACCAGAGGCTCCCGGTCGGGCCGCCCCCGCCGGTTCCCCCGCTCTCACTCGACCGGTCATTCGCTGGTCCAACCCGGCGAGGATACTGAGAGGTACACCTTGAGGCTTCCCGAGGAAGTTAGAAAACAGATACTTCTCAACCCGGAACTGCATCGAGCGAGAAGCTTGGTTATGTTGCCCAGGGAAGGTAGTTCGCGGCGTGGATATCGAACCGGCGAGGGAAGTAGCAGAGGGAGGTCTTCAAGGCGGTTGGACCGGGGGTTTAAGTCCGACCGCTGGGTTTTCACTATGGCGCCGCCTTTCTTAGTGAGGGCCTCTTCCGTTAGGTCTCCAAGGGTGGCCAATAACGGCGGCGCAGGAACATCTGCTGCTGCGCCCTTTCCGCCGCCGGCTGCTGTGGATTCTGTTTAA 1113 0.5849 MKNSNGSRENGGIYVFLLLILFIVPLAAAQSTNNNQNESYYNRFSPSMAIIIVILIAAVFLMGFFSIYIRHCADSPSASIRNLTGATSRPRRGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHAFHPECIDEWLSSHTTCPVCRANLVPEPGDSVRGIPVLNAPNDIEAQSEAQPEAHNNAVEPLPEQQQEPKLPISSEPPQVLSLNQTLNRNRTRGSRSGRPRRFPRSHSTGHSLVQPGEDTERYTLRLPEEVRKQILLNPELHRARSLVMLPREGSSRRGYRTGEGSSRGRSSRRLDRGFKSDRWVFTMAPPFLVRASSVRSPRVANNGGAGTSAAAPFPPPAAVDSV* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1531 370 CDD RING-H2_EL5_like 121 164 - -
Vra8g1531 370 PANTHER RING FINGER DOMAIN-CONTAINING 13 316 - -
Vra8g1531 370 MobiDBLite consensus disorder prediction 300 318 - -
Vra8g1531 370 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Vra8g1531 370 MobiDBLite consensus disorder prediction 203 236 - -
Vra8g1531 370 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 316 - -
Vra8g1531 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 169 IPR013083 -
Vra8g1531 370 Pfam Ring finger domain 121 164 IPR001841 -
Vra8g1531 370 MobiDBLite consensus disorder prediction 203 265 - -
Vra8g1531 370 MobiDBLite consensus disorder prediction 292 318 - -
Vra8g1531 370 MobiDBLite consensus disorder prediction 341 370 - -
Vra8g1531 370 SUPERFAMILY RING/U-box 115 170 - -
Vra8g1531 370 SMART ring_2 122 163 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1531 Vra-Chr8 32239082 32241043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1531 1 370 Rapid Response to Elicitors AT3G05200 45.623 1.19e-97 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1531 K10664 - gmx:100810865 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1531 8 32239082 32241043 Vra8g1531 8 32239082 32241043 ECH
Vra10g0580 10 11665232 11666576 Vra8g1531 8 32239082 32241043 PCT