Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1530 ATGGAAGTTAATACTACAGCCACCGTACCTGCAGGGCCACCAGCTAAGAACAATTCTTTCACACAGCACCGCTTACATTCAGAAAGACATAGACATAGCCACGGCCATTTCCCTACCAAAACCATTCTCATTACCGTCTCATTCGTTACCTTAGTTACGGTCCTATTTGTCATTCTTGTGGTCCTGTTCTTGATCCGTCGTCAAAAATCTTCCTCCAAAAGTGGCACTTGCAAAGAAGACAGTACAGAGCTTCATGACACAAGCAGCAGGCTCATTACTTCATCAACGTTGAATTCTAGCCCAGAAGTAAAGAGTGGGTGTCTTCACGGGGGAAATTTGGGCAGGACCCCAGCACCTACATTTCGAGGAGTCCAAGTGTTTACATATAGGGAACTAGAAATTGCTACAGACGGATTCAGTGAAAGAAATGTGATTGGTGGTAATGGAGGACATGGCTTGATGTATAGAGGAGTTCTAAGTGATGGCACTTTGGCAGCAATTAAGTTGCTTCGTAGTGAGGGTAAGCAAGGGGAGCGTGCCTTCAGAATAGAGGTCGATCTCCTAAGTCGCTTGCACTCTCCATATTTGGTGGAGTTACTTGGCTATTGCGCTGACCAACACCACAGGTTATTGATTTTTGAATACATGCCCGATGGTACACTTCACCGCCATCTTCACTCCCCCAACGATCAAACTCAACCGTTGGATTGGTGGGCCAGGATGAGGATAGCCCTTGATTGTGCTAGGGCACTGGAATTCCTTCATGAACATGCAGTCTCTCCTGTGATCCACAGAGACTTCAAGACTAACAACGTTCTGCTGGATCAAAATTTCCGTGCCAAGGTGTCTGATTTTGGATTGGCTAAGATGGGATCAGAGAAGAAGAACGGTCAGGTTTCCACCCGTGTGTTGGGGACCACTGGATATCTGGCACCAGAGTACGCCACGGGTAAGCTTACCACAAAGTCAGATGTTTACAGCTACGGTGTGGTTCTTCTCGAACTCCTCACGGGACGTGTGCCAGTTGATATCAAGCGGGCCCCAGGAGAACACGTCCTTGTCTCTTGGGCTCTTCCACGGTTGACAAACAGAGAAAAGGTGATTGAAATGGTTGATCCAGCTCTACGCGGACAGTACTCAAAGAAGGATTTAATTCAGATAGCTGCCATTGCAGCAATGTGCATACAGCCAGAAGCTGATTACAGGCCGCTCATGACAGATGTTGTACAATCACTAATACCACTTGTTAGGAACCCATCCTCCCTTAGTTCTAGCTCCCTACGATTTCAGAAACAAACGCCAAAGAGCAGAAGCAGCCTAGAAATAAACTAA 1332 0.4685 MEVNTTATVPAGPPAKNNSFTQHRLHSERHRHSHGHFPTKTILITVSFVTLVTVLFVILVVLFLIRRQKSSSKSGTCKEDSTELHDTSSRLITSSTLNSSPEVKSGCLHGGNLGRTPAPTFRGVQVFTYRELEIATDGFSERNVIGGNGGHGLMYRGVLSDGTLAAIKLLRSEGKQGERAFRIEVDLLSRLHSPYLVELLGYCADQHHRLLIFEYMPDGTLHRHLHSPNDQTQPLDWWARMRIALDCARALEFLHEHAVSPVIHRDFKTNNVLLDQNFRAKVSDFGLAKMGSEKKNGQVSTRVLGTTGYLAPEYATGKLTTKSDVYSYGVVLLELLTGRVPVDIKRAPGEHVLVSWALPRLTNREKVIEMVDPALRGQYSKKDLIQIAAIAAMCIQPEADYRPLMTDVVQSLIPLVRNPSSLSSSSLRFQKQTPKSRSSLEIN* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1530 443 MobiDBLite consensus disorder prediction 87 103 - -
Vra8g1530 443 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE 3 434 - -
Vra8g1530 443 MobiDBLite consensus disorder prediction 73 103 - -
Vra8g1530 443 ProSiteProfiles Protein kinase domain profile. 140 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1530 443 Gene3D Transferase(Phosphotransferase) domain 1 216 431 - -
Vra8g1530 443 SUPERFAMILY Protein kinase-like (PK-like) 120 412 IPR011009 -
Vra8g1530 443 MobiDBLite consensus disorder prediction 1 21 - -
Vra8g1530 443 Pfam Protein tyrosine and serine/threonine kinase 147 412 IPR001245 GO:0004672|GO:0006468
Vra8g1530 443 PANTHER OS01G0750732 PROTEIN 3 434 - -
Vra8g1530 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Vra8g1530 443 Gene3D Phosphorylase Kinase; domain 1 114 215 - -
Vra8g1530 443 CDD STKc_IRAK 147 415 - -
Vra8g1530 443 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1530 Vra-Chr8 32221485 32224965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1530 107 436 Receptor kinase-like Gene Family AT3G58690 62.130 4.44e-149 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vra8g1530 PK_Tyr_Ser-Thr 1.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1530 - - gmx:100499645 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1530 8 32221485 32224965 Vra8g1530 8 32221485 32224965 ECH