Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1509 ATGAGAGCCGGCTCAATGGCACCAACAAGGAAATCTAGAAGTGTTAATAAGCGGATTTCAAGTTCAAATGATGTTTCTCCTGAGAAAGATGGAGTTAATTCAAATAAAAACAAGCAACGGAAAAAGTTGACTGATAAACTGGGATCTCAGTGGAGCAAGGAGGAACTAGAGCGATTCTATGAAGCATATAGAATGTATGGGAAAGACTGGAAGAAGGTGGCTGGTGTTGTACGAAATAGAACCACTGAAATGGTAGAAGCTCTTTACAATATGAATCGGGCATACCTCTCTCTGCCAGAGGGCACGGCTTCTGTTGTTGGCCTCATAGCAATGATGACTGATCACTACAATGTGCTGGAAGAGAGCGACAGTGAAATGGAGAGCAATGATGCACTAGGATCTCGGAAATTTGTAAAACGAAAGCGGGAAAAAGTTCAGCTTAGTGTCTCTAAAGATCAGTCTCATTCAATTGCTGCCAGTGATGGTTGCCTCTCTTTACTGAAGAAGAGACGCTTAGATGGTATTGTGCCTCATGCTGTTGGTAAACGGACTCCTCGTGTTCCAGTTTCTTATTCTTATAAGAAGGATTATACAGAAAATTATGTTTCGCCTTATAGAAGAAGCCTAAAGTCAACTACTGATGCTAATGATGATGAAGTTGCACATGTGGTAGCTTTGGCCTTAACCGAGGCTGCACAAAGAGGAGGATCTCCCCAAGTTTCTCAATCAACATGTAGAAGAGCAGAGCCAAAACCCTCACCTGTCCTTCGTTGGGAAAGAAAGCAGCAACTGTCAGAGACAGCTCGTGCCAAGTTACACAATCTTTCAGTGGATGAAGAGTTATTAGACGGTAGTATAGAAAGCAGGGGAGCTGACAATGGAGAATATGCAAGAGATAATAGTTCATTGATGGATATGGAAGGCACAGGAACAGTTGAAGTTCTTCAGAAGGGGGGGAAATTTTACAGAAAGAAAGAGAGAGTGAAAAACGTGGGAAACCATCAGCTTGATGATGGTGGGGAAGCATGTAGTGGCACTGAAGAAGGGCTTAGTTGCTCACTAAAGGAAATGGTTGATATTGAGGTTACTAATGAAAAGCTTGAAAAAATCTCTCCAAAAGGTGGGAGGAAACGAAACAAGAAACTCTTCTTTGGAGATGAAACCCCTGCGTTGAATGCGTTGCAAACTTTGGCAGACCTGTCTCTAATGATGCCAATATCTACAATAGATTCTGAATCATCTATCCAATTGAAGGGAGACAGGATTTCTGCTGATAAAGATAGTAAGTCCGCTCTACCTGAAGAAACATTAACAAGCCATAAGAGACATAAACTTAAACACAGTGTAGTGCCTGAAATTGAGGTTTCAACCTCCAAAAAGTCCAAGCTTGGAAAGGAATCAACAAAGGACACGAACGTGCTTTCTGAATCAAAAGAACAACTTCCTTTTGCTGATACAACATGGAAAAGAAAGCGGAAGTCTGTGGTTTCCAAGGTTGCAAATGCAAAGCTTGATTCTTGTCCAAGTGGTCCCTTGAAAGATGAGGCTTTAGATGATGAGAAAAAACCAGTAGTTAAAGGAAAACATGGTGATCAGGTTTTTACCCTACCAAAGCAATTGAAGACCGTTAAATCATCAGAGAGTTCCTTGTGTATTGATCAGAAAGAGACAGTACCAACAGAAATTCCACTTTTGAACGAAGTTAGTTTACCAACTAAACGAAGTAGGCGGAAGATGAATTTACAGAGAACTTCCTCTGCTAAGCAAAAGTCTTCTGATTTCATATTGAAAAGTCAAGCTAACAAGCACACTGATTTAAAGGAAAAGCTTTCCAGTTGCTTGTCATCTAATATGGTTCGCAGATGGTTTATTTTTGAATGGTTTTATAGTGCAATTGATTATCCATGGTTTGCCAAAAGGGAATTGATGGAATACTTAAATCATGTTGGACTAGGGAATATCCCAAGGTTAACTCGTGTTGAGTGGAGTGTTGTAAGAGGTTCCCTTGGAAAACCTCGGCGGCTTTCTGAACATTTTCTTCATGATGAAAGGCAAAAACTTGCAGAGTATCGGGAATCAGTGAGAAAGCATTATGCTGAACTGCGAACTGGTATTAGGGATGGACTTCCAACTGATTTAGCTAGACCATTATGTGTTGGGCAGAGAGTAATTGCTATTCATCCAAAAACAAGAGAGATTCATGATGGTAGCGTGCTTACTGTTGATTATGACAAGTGCAGGATTCAGTTTGACCGTCCTGAATTAGGTGTTGAGTTTGTAATGGACATTGATTGTATGCCTTTCAATCCATTAGATAATATGCCAGAAGCTCTGAGGAGGCATATTGATGACAGAAAAGGATCTTTTATCCCTATAGAGCCACATATTAATGGAAATTCAAATTTTGGGGGGTGCGAAAATCATTCCTCACCTTTGAAGGTACATACTTCATCAAGTGCTTTAGTAATGCATGGAAAGGCTACGGTTGCTACCATGGATAACTTCTGTGCACAAGCAGGTTGTGTTCAACCATGTAAAGTAACACACCATCAAGCTAGGGAAGCTGACATACATGCACTTTCTGAACTAAAGCGAGCTCTAGATAAAAAGGAGACATTGTTGATGGAGCTTCGAAGTTCAAATAGCGATATATTGGAAAACCAAAATGGCATAGAATGCTTAAACGATTCTGAGGTTTTCAAGAAGCATTATGCCACGGTACTGGTAGAGCTAAAGGAAGCCAGTGGGCAGGTTTCTGATGCAATGTTACAACTGAGGCAGCGCAATACCTACAGAGGAAACTCTCTGCCACCATGGATGAAGCCACAAACAGGTTTTAGTGTTCATGATGATCTTCCCAGTATGTTGGATGGTTCTCTTACACAAGAGCTTGGGTCAACTGTTGTTCAAATTATTAAAGGATCCAGGTCAAGGGCACATGCAATGGTAGATGCCGCATTTAAGGCTTTGTCTTTGACAAAGGAAGGTGAAGATGCGTTCGTGAAGATTGGGCAAGCTTTGGATTCTATTAATCATCAGCAATTGGCCTCCAAGTCTAGATTACCTGTGATCAGGTCTCAAGAGCAAGTGAACACAAATGGCAGTTTTTGTCATGTTAATAATTCAACTTGCAGTGTATCAGAGTCTATAATTAACGATCCATCTGGTGCAAAAGTACATAATTATTCTGACAAATTTGATACTGAACTTCCGTCAGATCTTATCACTTCATGTGTTGCTACATTAATCATGATTCAGACTTGTACTGAACGGCAATACCCTCCAGCTGATGTGGCTCAGATATTAGATTCTGCAGTTAGCAGCCTGCATCCATGCTGTCCTCAAAACCTTCCTATTTATAGAGAAATTCAAATGTGCATGGGAAGAATCAAAACACAGATTTTAGCTTTGATCCCTACTTGA 3423 0.4061 MRAGSMAPTRKSRSVNKRISSSNDVSPEKDGVNSNKNKQRKKLTDKLGSQWSKEELERFYEAYRMYGKDWKKVAGVVRNRTTEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSEMESNDALGSRKFVKRKREKVQLSVSKDQSHSIAASDGCLSLLKKRRLDGIVPHAVGKRTPRVPVSYSYKKDYTENYVSPYRRSLKSTTDANDDEVAHVVALALTEAAQRGGSPQVSQSTCRRAEPKPSPVLRWERKQQLSETARAKLHNLSVDEELLDGSIESRGADNGEYARDNSSLMDMEGTGTVEVLQKGGKFYRKKERVKNVGNHQLDDGGEACSGTEEGLSCSLKEMVDIEVTNEKLEKISPKGGRKRNKKLFFGDETPALNALQTLADLSLMMPISTIDSESSIQLKGDRISADKDSKSALPEETLTSHKRHKLKHSVVPEIEVSTSKKSKLGKESTKDTNVLSESKEQLPFADTTWKRKRKSVVSKVANAKLDSCPSGPLKDEALDDEKKPVVKGKHGDQVFTLPKQLKTVKSSESSLCIDQKETVPTEIPLLNEVSLPTKRSRRKMNLQRTSSAKQKSSDFILKSQANKHTDLKEKLSSCLSSNMVRRWFIFEWFYSAIDYPWFAKRELMEYLNHVGLGNIPRLTRVEWSVVRGSLGKPRRLSEHFLHDERQKLAEYRESVRKHYAELRTGIRDGLPTDLARPLCVGQRVIAIHPKTREIHDGSVLTVDYDKCRIQFDRPELGVEFVMDIDCMPFNPLDNMPEALRRHIDDRKGSFIPIEPHINGNSNFGGCENHSSPLKVHTSSSALVMHGKATVATMDNFCAQAGCVQPCKVTHHQAREADIHALSELKRALDKKETLLMELRSSNSDILENQNGIECLNDSEVFKKHYATVLVELKEASGQVSDAMLQLRQRNTYRGNSLPPWMKPQTGFSVHDDLPSMLDGSLTQELGSTVVQIIKGSRSRAHAMVDAAFKALSLTKEGEDAFVKIGQALDSINHQQLASKSRLPVIRSQEQVNTNGSFCHVNNSTCSVSESIINDPSGAKVHNYSDKFDTELPSDLITSCVATLIMIQTCTERQYPPADVAQILDSAVSSLHPCCPQNLPIYREIQMCMGRIKTQILALIPT* 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1509 1140 ProSiteProfiles SANT domain profile. 46 83 IPR017884 -
Vra8g1509 1140 MobiDBLite consensus disorder prediction 418 444 - -
Vra8g1509 1140 SMART sant 47 95 IPR001005 -
Vra8g1509 1140 MobiDBLite consensus disorder prediction 455 474 - -
Vra8g1509 1140 MobiDBLite consensus disorder prediction 234 248 - -
Vra8g1509 1140 ProSiteProfiles Myb-like domain profile. 49 90 IPR001005 -
Vra8g1509 1140 Pfam Myb-like DNA-binding domain 49 86 IPR001005 -
Vra8g1509 1140 Gene3D - 5 103 - -
Vra8g1509 1140 MobiDBLite consensus disorder prediction 419 441 - -
Vra8g1509 1140 SMART DIRP_2 628 729 IPR033471 -
Vra8g1509 1140 MobiDBLite consensus disorder prediction 1 46 - -
Vra8g1509 1140 Pfam DIRP 627 728 IPR033471 -
Vra8g1509 1140 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 85 IPR017930 -
Vra8g1509 1140 MobiDBLite consensus disorder prediction 458 473 - -
Vra8g1509 1140 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 6 1140 IPR028306 -
Vra8g1509 1140 MobiDBLite consensus disorder prediction 234 254 - -
Vra8g1509 1140 Coils Coil 860 880 - -
Vra8g1509 1140 SUPERFAMILY Homeodomain-like 46 94 IPR009057 -
Vra8g1509 1140 CDD SANT 51 85 IPR001005 -
Vra8g1509 1140 MobiDBLite consensus disorder prediction 31 46 - -
Vra8g1509 1140 MobiDBLite consensus disorder prediction 9 30 - -
Vra8g1509 1140 PANTHER LIN-9 6 1140 IPR010561 GO:0006351|GO:0017053
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1509 Vra-Chr8 32031886 32045960 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra8g1509 DIRP 3.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1509 - - gmx:100816217 1843.17