Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1508 ATGAATTTGGGTGTGGAAATGTTCGGGACGAGTAGAAGGCACAGGAGCGGTGGGCCTGTGGGACCCGTTTTGATTTCGAAGCGTTTTGTTTGGCCTCACGGTGGAAGAATGGTGTTTCTAACAGGTTCCTTCACGAGATGGACAACAGTTATACCTATGTCACCCAAGGAAGGATGTCCAACTGTATTTCAAGTTATTTGCGGCTTAACGCCTGGATATCATCAGTACAAATTTAATGTAGATGGTGAGTGGCGGCATGATGAGCATCAGCCATTTGTATGTGGGGACGGTGGGACAGTGAACACTTTTTATTTAGTGAGACAACCAGTTATTTTGCCTCCTATCGTAAATGGTGAAACACCTGGTCGATCCCACATGGAGGTTGACTATGATGTCGTTGGGCATGTGGAAGCTAAACCGAGGATGTCAGAGTCTGATCTGCAGGTCTCACGACATCGTATTTCGGTTTTCTTGTCTACACATACGGCTTATGAGTTGCTTCCCGAGTCAGGCAAGGTTGTTGCCTTGGATATAACTTTACCGGTTAAGCAAGCATTCCATGCTCTTTATGAAGAAGGAATATCGTCAGCTCCTGTGTGGGATTCTAGTAAGTGCCAGTTTGTTGGAATGCTTAGTGCTATGGACTTCATTTTAATACTAAAACAGTTGGGGATTCATGGATCAAACATGACTGAAGAACAACTGGAGACACATACTATAGCAGCATGGAGAGAGGCAAAGGAACAAGAATGCGCAATTGATAGTAAAGGGAGAGCATACCCTCAACATTTAGTTCATGCTGGGCCCCTCGAGTGTCTAAAAGATGTTGCTTTAAAAATTTTGCAAGACAAGGTGGCAACAGTTCCTATTATTCAGTCTTCTTCAGAGGATGGTTCATTTCCTCAGCTGCTACACCTTGCTTCCCTCTCAGAAATACTAAAATGTATATGCAGGCATTTTAAGCACTGTTCGGATTCCTTGCCCATTCTTCAGGTACCAATTAGTACGTTACCTATAGGTGCATGGGTGTCAAAATTGGGGCAATCCAATAAACAGCAACTTGCTATGCTATGGCCACATGCTTCTCTTGGCGAAGCTCTATCTCTGTTGATTCAAGCTGGAATTAGCTCAATACCAATTGTGGATATTAATTATTCATTACAAGATATGTATTCAAGAAGAGATATTATTGCGTTGGTTAGAGATAAAATGTATGCAAGGATAGATCTGGATGGGTTTAGTATCCATCAGGCATTGCTTTTGGGACGAGATGCAGGTTTTCCTTGTGGGCTGCGCAATGGGCCGAGATGTCATATGTGTTTGAGATCTGATTCATTACACAAAGTGATGGAGCGCTTGACAAACCCTGGTGTTAGAAGACTTGTGGTTGTGGAGGCGGGTACCAGGCGTGTGGAAGGTATCATTTCTATTAGTGACATATTCAGATTATTGTTATGCTGCTAG 1464 0.4324 MNLGVEMFGTSRRHRSGGPVGPVLISKRFVWPHGGRMVFLTGSFTRWTTVIPMSPKEGCPTVFQVICGLTPGYHQYKFNVDGEWRHDEHQPFVCGDGGTVNTFYLVRQPVILPPIVNGETPGRSHMEVDYDVVGHVEAKPRMSESDLQVSRHRISVFLSTHTAYELLPESGKVVALDITLPVKQAFHALYEEGISSAPVWDSSKCQFVGMLSAMDFILILKQLGIHGSNMTEEQLETHTIAAWREAKEQECAIDSKGRAYPQHLVHAGPLECLKDVALKILQDKVATVPIIQSSSEDGSFPQLLHLASLSEILKCICRHFKHCSDSLPILQVPISTLPIGAWVSKLGQSNKQQLAMLWPHASLGEALSLLIQAGISSIPIVDINYSLQDMYSRRDIIALVRDKMYARIDLDGFSIHQALLLGRDAGFPCGLRNGPRCHMCLRSDSLHKVMERLTNPGVRRLVVVEAGTRRVEGIISISDIFRLLLCC* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1508 487 Gene3D Immunoglobulins 23 107 IPR013783 -
Vra8g1508 487 SUPERFAMILY E set domains 28 106 IPR014756 -
Vra8g1508 487 Coils Coil 487 487 - -
Vra8g1508 487 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 17 485 - -
Vra8g1508 487 ProSiteProfiles CBS domain profile. 349 410 IPR000644 -
Vra8g1508 487 SMART cbs_1 353 401 IPR000644 -
Vra8g1508 487 SMART cbs_1 172 221 IPR000644 -
Vra8g1508 487 SMART cbs_1 436 485 IPR000644 -
Vra8g1508 487 Pfam Glycogen recognition site of AMP-activated protein kinase 27 108 IPR032640 -
Vra8g1508 487 Pfam CBS domain 437 484 IPR000644 -
Vra8g1508 487 Pfam CBS domain 172 220 IPR000644 -
Vra8g1508 487 Pfam CBS domain 354 399 IPR000644 -
Vra8g1508 487 Gene3D - 143 325 IPR046342 -
Vra8g1508 487 Gene3D - 332 487 IPR046342 -
Vra8g1508 487 CDD E_set_AMPKbeta_like_N 28 101 - -
Vra8g1508 487 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 17 485 - -
Vra8g1508 487 SUPERFAMILY CBS-domain pair 152 323 IPR046342 -
Vra8g1508 487 SUPERFAMILY CBS-domain pair 352 484 IPR046342 -
Vra8g1508 487 ProSiteProfiles CBS domain profile. 166 228 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1508 Vra-Chr8 32019023 32029483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1508 29 116 Protein tyrosine phosphatase (PTP) family AT3G01510 33.333 6.00e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1508 - - gmx:100790062 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0555 10 11439714 11447756 Vra8g1508 8 32019023 32029483 PCT