Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1504 ATGGATCAGGAGGAGCAAGATAAAGCTTTGCCCATTGCAAATGTGGGTAGAATCATGAAGCAAAATCTTCCTCCCAGTGCAAAGATCTCAAAGGAAGGGAAACAACTAATGCAAGAGTGTGTTACAGAGTTCATAAGTTTTGTGACTGGTGAGGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGGGATGACATCTGTTGGGCTCTAAGTTCCTTAGGGTTTGACAACTATGCTGAGGCCATATCAAGGTACTTGCATAAATACAGGCAAGCAGAAAGGGAGAAAATCAAAAACAACCACAAAAAATATGAAGGATCAGCAACAAAATCTCTCAACCAAACTCAACTCATCCTTGCTCCACCACCATCACTCTCTAGGGTTACTCATGACAAGCTTCAAAACCCTCCCACCACAGATCAATCCTAG 438 0.4292 MDQEEQDKALPIANVGRIMKQNLPPSAKISKEGKQLMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYAEAISRYLHKYRQAEREKIKNNHKKYEGSATKSLNQTQLILAPPPSLSRVTHDKLQNPPTTDQS* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1504 145 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 73 IPR003958 -
Vra8g1504 145 MobiDBLite consensus disorder prediction 109 145 - -
Vra8g1504 145 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 112 - -
Vra8g1504 145 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 112 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vra8g1504 145 SUPERFAMILY Histone-fold 6 110 IPR009072 GO:0046982
Vra8g1504 145 Coils Coil 78 98 - -
Vra8g1504 145 Gene3D Histone, subunit A 1 124 IPR009072 GO:0046982
Vra8g1504 145 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Vra8g1504 145 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Vra8g1504 145 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Vra8g1504 145 MobiDBLite consensus disorder prediction 100 145 - -
Vra8g1504 145 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1504 Vra-Chr8 31993368 31994229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1504 5 103 CCAAT-HAP3 Transcription Factor Family AT1G09030 72.727 2.96e-53 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vra8g1504 CBFD_NFYB_HMF 4.8e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1504 K08065 - gmx:100815151 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1504 8 31993368 31994229 Vra8g1504 8 31993368 31994229 ECH