Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1500 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCTACAGAAAATACCAGAGAAGATGCAGCAGTTAAGCAGCAACCTGAGATCCTCGCTCAGTTCCATAGTCCACATTCTCTTACTTCAACCACAACAACAAATAACAGCAATGCTTCCAACACAAATTCACAACCACCTGCACCTGTTAAGAAGAAAAGGAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTAATAGCTTTATCACCAAACACACTAATGGCCACAAACCGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAAAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCATGGAAGCTTAAGCAGAGAACAAGCACAGAGGTTCGAAAGAGGGTTTATGTTTGTCCAGAACCTTCGTGTGTCCACCACAACCCTGCAAGAGCTCTCGGTGATCTCACCGGCATTAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCTGTTCAGTCTGACTGGAAAGCCCACTCAAAAATCTGTGGTACAAGGGAATACAAATGTGACTGTGGTACTATTTTTTCAAGAAGAGACAGTTTCATTACACACAGAGCTTTCTGTGACGCACTAGCTGAAGAGAACAACAAAGGCAACGAAGGACAATTACCAAAGATAGGTACAAACTTGCAATGTCAACAGATTCCGAACCTTGTTTCCTCGTTACCAATCAACACCAACGTTGTTCCCAACCCACAACAAATCGGTGGCACCTCGGAGTTCAACCATGCTGAACACAAGCACCCACTGTCACTCCCACACGAGCTAATGCCAATGCCTGCACCAAAACCCTTCAACTCCAACACTACCATGGCAGGAACAGTGTTCTCCAGAAGCCTCTCGTCAACCTCTTCACCGTCTCTCCAACTAAGTTCAAACATATTCGAGGAAAACGGGCTCCACCTGGCTGCAGGGTCCCAACACATGTCAGCCACCGCACTGCTGCAAAAAGCTGCGCAAATGGGAGCAACAGTGACGGATAAAACTTTTACCACAAACATGGCACCGCCGTCGTTTGGGGTGCTGCAGCAGCAGCAGCAGCAGCCGAATGGACAATCCTTCATGAACCAGTACATGCACAGTGGCCAACAGGATCCCAACGTTAGCATCTCCGCTCAGTATAACGGTTTCGGCGGAAATGGGATGAGTGGAGGGAGCGTTGGAATGAACGGTGTGGACATGTTCAACGCTATCTTGGACCAAAGCAAGGCTTTATCAAAGATCATAGAGCAAAGCAACAGAAGCAGTAGTGGAGGTGCAACAAATGGAGGTTCAAGTGGTGCTATTAACGTCGGTGGAAGTAAAGGAAGTGAGGATGTGATGACTTTGGACTTTTTGGGAATAGGAGGTGGTGGCGGCGGAGGCGGCGGCGGCGGTGCGCATGGAAACTTTTACGGTGGTGGTCAGCAAGCAGAAAACGGTGCAGCGGATGAGGTTTGGAGAAACTGGTCAAGTAAGAACGCAGGGTTTGAATCATTTTCAGCAACAAGTAGCATTTGA 1581 0.4756 MSNITSCDSGSFSTENTREDAAVKQQPEILAQFHSPHSLTSTTTTNNSNASNTNSQPPAPVKKKRSLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKGNEGQLPKIGTNLQCQQIPNLVSSLPINTNVVPNPQQIGGTSEFNHAEHKHPLSLPHELMPMPAPKPFNSNTTMAGTVFSRSLSSTSSPSLQLSSNIFEENGLHLAAGSQHMSATALLQKAAQMGATVTDKTFTTNMAPPSFGVLQQQQQQPNGQSFMNQYMHSGQQDPNVSISAQYNGFGGNGMSGGSVGMNGVDMFNAILDQSKALSKIIEQSNRSSSGGATNGGSSGAINVGGSKGSEDVMTLDFLGIGGGGGGGGGGGAHGNFYGGGQQAENGAADEVWRNWSSKNAGFESFSATSSI* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1500 526 SMART c2h2final6 91 113 IPR013087 -
Vra8g1500 526 SMART c2h2final6 132 162 IPR013087 -
Vra8g1500 526 SMART c2h2final6 167 187 IPR013087 -
Vra8g1500 526 MobiDBLite consensus disorder prediction 437 460 - -
Vra8g1500 526 MobiDBLite consensus disorder prediction 1 20 - -
Vra8g1500 526 Gene3D Classic Zinc Finger 146 224 - -
Vra8g1500 526 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 5 477 - -
Vra8g1500 526 Gene3D Classic Zinc Finger 70 137 - -
Vra8g1500 526 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Vra8g1500 526 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Vra8g1500 526 MobiDBLite consensus disorder prediction 31 60 - -
Vra8g1500 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Vra8g1500 526 MobiDBLite consensus disorder prediction 1 76 - -
Vra8g1500 526 MobiDBLite consensus disorder prediction 437 459 - -
Vra8g1500 526 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Vra8g1500 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1500 Vra-Chr8 31927688 31931563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1500 48 350 IDZ Gene Family AT3G50700 56.575 4.80e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g1500 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1500 - - gmx:100785295 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1500 8 31927688 31931563 Vra8g1500 8 31927688 31931563 ECH
Vra8g1500 8 31927688 31931563 Vra3g0137 3 1564428 1568600 PCT