Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1498 ATGGATCACGCGCGATCGACCAACGGCGAGGACAATGCGGCGGGAATTCCGGACGACTTACGGTGCAAGAGGTCCGACGGAAAGCAGTGGCGGTGCACGGCCATGTCGATGCCGGATAAGACGGTGTGCGAGAAGCACTACATCCAGGCTAAGAAGCGCGCTGCGAATTCCGCAATGAGGGCCAACCTCAAGAAAGCCAAGAGGAAGTCGCAGTCGCTGAACGAGTCTGATGTTTATTTGGAGAGTAAGAGCGACGATTTCGACGTTCCTCTCTCTGCTATAAGCCTTTCGCAGAAGAAGCTCTCGAAGAATCAGTTTCGTTACACGCCCGAGCGTGACGCTCGAAGAGCCTCCTCTGCGAGACATGCTCATGACGAGGTGGATGTGGATGTTGATGCTGATGCGGATGCAGATGTAGATGCAGATGTGGATGTGGATGTGGATGCGGATGCGGATGCTGATGTGGCGCTCTATGAAGAAGACAATTGGGTCTCCTATGATTCCCCGCCGGACTCCTCGCTCAAGAGATCGCGAAGGAGCTTGGATGCTAATGCCACCACTCAGGAATATTCCGACGGAACCTCTGGTTCTTCTGAAGACACCGGCGGGCAGACTTGTCATCAGTGCCGGAGGAATGACAGAGATAGAGTTACTTGGTGCTTAAAATGTGACCGGAGGGGATACTGTGATAGCTGTATATCAGCATGGTACTCGGACATTTCGTTGGATGATGTACAGAGGATATGTCCTGCTTGCCGCGGTATATGTAATTGCAAGACTTGCTTGCGGAGTGATAATTCTATCAAGGTTCGGATACGCGAGATACCTGTTCTGGATAAGTTACAGTATCTCCATGTGTTGCTATCTTCGGTGCTTCCGGTGGTAAAACAGATCCATCGTGAACAATGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGGGCTGAAATAGATCTTCCGAGAATAAAATTCAACACAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCTATTACTGATTATCATCGACGGTGTCCAAATTGCTCATATGATTTGTGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAACAGCAGATCACAATAAAGAACCTCAGACAGAGCTAGCTAAAACTTGTGATCAAAATATATTAAGTAAATTTCCCCATTGGAGATCCAACGACAATGGAAGTATTCCATGCCCCCCTAAGGAGTACGGTGGCTGTGGTCATTCTTCATTAAACTTAAGCCGAATTTTCAAGATGAATTGGGTAGCAAAGTTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTGGTGATGTCGATGGTCCACCAGAAACTGGACAGAGTGATCTCAGACTGTGCCAGTGTTCTCATAGAGAAGCCAGTGATGATAATTATCTTTTTTGTCCAGCATCTGACGATATCAAAACTGGTGGGATTGGAAAATTTAGAAAGCATTGGAAAACTGGCGAGCCCATTATTGTTAAGAAAGTATTTGACGGGTCATCCATTTCAAGCTGGGATCCAATGGTCATATGGAGGGGGGTTCAAGAGACAACAGATGAAAACGCAAAAGATGAAAACAGGATGGTTAAGGCCATAGATTGCTTAGATGGATCTGAGATTGATATCGAGCTTGCTCAGTTCATGAAAGGATACTTCGAAGGGCGTGTTCATGAAAATGGTTGGCCACAGTTATTAAAATTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTCTATTGTATCAAAGACCCGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATAGCTTATGGAATTAGCGATGAACTTGGAAGAGGTGATTCAGTGACAAATCTCCACTTCAATATTCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGTTAAAGGACTGGCAGAGAACTAAAATTGAAATTATGCAAAATGCTAAAGCTGATGAGGAATCTGAGGCGAAAGAGTCACATGGAGATCCTCAAATATTTTCAAGGGGGAGTTCACTTGATTCATCACTTGGTACAAAAAGTAGTGTACTTGACATGGATTCAAACCAGAATAAGTCAATTATGGATCAAGAATTTGAAATTTATTCTAGTGCTGAAGGTGATATGGTCAATTGTAAGGTCCTGTCTACACAAAATGGAGATGTCTCTGAGAAAACCCATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTTCCAATATTGACTAAATATCTGAAAATACATTGGAAGGAATTGGGGAAGTCAGATGATGGGGGAAATGAATTTGTTGCATGGCCTCTATATGGTGGAGCTATTTTTCTCGACAAACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAATCGAATGTTCAGCTGGGCCTTGATTTCTTATCTCCGGAAAGCCTAGGCGATGCTGTACGATTGACAGAGGAAATTCGCTTTCTACCGATTGAACATGAATCAAAAGTTCAAGTATTGGAGTTGGTGTTGGCGTGTACTTGGAAATTTATGCAGGTGGGGAAGATATCTCTCTATGCGGCAAGTTCTGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCAAAAGTCTCCTCCAAGACTTGGCGCCGAGATTGGATATGGAGACCCTAATTTGACAGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTGCTTGA 2883 0.4398 MDHARSTNGEDNAAGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSQSLNESDVYLESKSDDFDVPLSAISLSQKKLSKNQFRYTPERDARRASSARHAHDEVDVDVDADADADVDADVDVDVDADADADVALYEEDNWVSYDSPPDSSLKRSRRSLDANATTQEYSDGTSGSSEDTGGQTCHQCRRNDRDRVTWCLKCDRRGYCDSCISAWYSDISLDDVQRICPACRGICNCKTCLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRIKFNTDEQMCCNFCRIPITDYHRRCPNCSYDLCLNCCRDLREATADHNKEPQTELAKTCDQNILSKFPHWRSNDNGSIPCPPKEYGGCGHSSLNLSRIFKMNWVAKLVKNVEEMVSGCRIGDVDGPPETGQSDLRLCQCSHREASDDNYLFCPASDDIKTGGIGKFRKHWKTGEPIIVKKVFDGSSISSWDPMVIWRGVQETTDENAKDENRMVKAIDCLDGSEIDIELAQFMKGYFEGRVHENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYIAYGISDELGRGDSVTNLHFNIRDMVYLLVHTNEVKLKDWQRTKIEIMQNAKADEESEAKESHGDPQIFSRGSSLDSSLGTKSSVLDMDSNQNKSIMDQEFEIYSSAEGDMVNCKVLSTQNGDVSEKTHPGVLWDVFRRQDVPILTKYLKIHWKELGKSDDGGNEFVAWPLYGGAIFLDKHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESLGDAVRLTEEIRFLPIEHESKVQVLELVLACTWKFMQVGKISLYAASSAIKEVQKLVLDQKSPPRLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1498 960 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Vra8g1498 960 Gene3D Cupin 467 884 - -
Vra8g1498 960 MobiDBLite consensus disorder prediction 1 20 - -
Vra8g1498 960 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 7 949 IPR045109 GO:0032454|GO:0033169
Vra8g1498 960 MobiDBLite consensus disorder prediction 130 145 - -
Vra8g1498 960 ProSiteProfiles Zinc finger RING-type profile. 206 253 IPR001841 -
Vra8g1498 960 MobiDBLite consensus disorder prediction 681 713 - -
Vra8g1498 960 MobiDBLite consensus disorder prediction 105 129 - -
Vra8g1498 960 Coils Coil 56 76 - -
Vra8g1498 960 MobiDBLite consensus disorder prediction 681 695 - -
Vra8g1498 960 MobiDBLite consensus disorder prediction 179 205 - -
Vra8g1498 960 PANTHER JMJC DOMAIN PROTEIN JMJ24 7 949 - -
Vra8g1498 960 SMART cupin_9 586 875 IPR003347 -
Vra8g1498 960 MobiDBLite consensus disorder prediction 697 713 - -
Vra8g1498 960 MobiDBLite consensus disorder prediction 105 145 - -
Vra8g1498 960 Pfam WRC 17 57 IPR014977 -
Vra8g1498 960 Pfam JmjC domain, hydroxylase 811 854 IPR003347 -
Vra8g1498 960 MobiDBLite consensus disorder prediction 162 208 - -
Vra8g1498 960 SUPERFAMILY Clavaminate synthase-like 488 885 - -
Vra8g1498 960 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 201 266 IPR018866 -
Vra8g1498 960 ProSiteProfiles JmjC domain profile. 579 875 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1498 Vra-Chr8 31914202 31921172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1498 17 57 GRF Transcription Factor Family AT3G13960 46.341 2.26e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra8g1498 JmjC 2e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1498 K15601 - gmx:100801287 1624.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1498 8 31914202 31921172 Vra8g1498 8 31914202 31921172 ECH