Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1497 ATGGCGGAAACGAAGTTGAAAGAAACTGTTCACGAAGAAGAAGAAAAAGAAGAAGCAGATAACAAAAGTTTCGAAGAACTCGGCGTGGACGCTCGTCTCCTTCGCGCCTTACAAAAGAAAGAGATAGAGAAACCCACTCCAATTCAGGCCGTTGCGATTCCACTCATTCTGGAAGGTAAGGACGTGGTTGCACGCGCCAAAACAGGTTCCGGAAAGACCTTAGCGTATCTTCTCCCGTTGCTACAGAAACTGTTTATCGTTAGTGGTGATCGGAAGAAGCTAGCGCCCAATGCTTTTGTTCTTGTCCCTACTCGCGAATTGTGTCAACAGGTGTACGCGGAAGTGTTGTCGCTGGTTGAGTTATGCAGAGTTCAACTGAAAGTTGTGCAGCTGAATAGCAACATGCTTGCTAATGACTTGCGGGCAGCATTGGCCGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGCATTGCGAAGTGTTTGTCCGGTGGCATACTTAAGGCGGCATCCATTAACGAATCCCTTGAAACTCTTGTTCTTGATGAGGCCGATCTTCTTCTATCATATGGGTATGAAAATGATATAAAAGCTTTTACACCTCATGTTCCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCGGATGTTGACAAACTAAAGAAGTTGATTCTGCACAACCCATTTATTTTGACTTTGCCTGAAGTGGGAAATAATAAGGATGAGATCATTCCTAAAAGTGTTCAGCAGTTTTGGATCTCATGTTCTACCAGTGATAAGTTACTTTACATCCTTGCTGTGTTGAAGTTGGGGTTGGTCCAAAAGAAAGTCCTTATATTTACAAATACCATAGACATGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGGATCAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCCCGTCTCCATATTCTGGAGGAATTCAATGCGGGCCTATTTGATTATCTAATTGCAACAGATCTTAGTCAGTCAAAGGAAAAGGATGAAGTGTCTAAGGAAAGTAATGTCGTATCACGGAAGTCTAGAAAACGTGCTAAAGTAAAATTAGATTCTGAATTTGGAGTTGTAAGGGGAATTGACTTTAAAAATGTATTCACGGTTATAAACTTTGAAATGCCTCAAAATGTTGAGGGATATGTTCATCGAATTGGACGAACAGGAAGAGCATACAATTCTGGTACTTCTGTCTCTCTGGTTTCTCCCGATGAAATGGCTACTTTAGAAGAAATAAGATCTTTCGTTGGAGATGACGAAAACAAAGGCACAAGTTCTATTGCCGAGTTTCCCCTTCTCACCAAGAATGCAGTTGAATCTCTACGGTATAGAGCTGAGGACGTTGCCAAGAGTGTAACCAGAATTGCAGTCCGAGAATCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCCCATTTTGAGACTAATCCAAGAGACCTAGATCTACTGAAGCACGACAAAGTTTTGAGCAAGAATGCTCCACCTCCGCACCTGCGTGATGTGCCTGACTACCTATTAGACAAACAAACGAAAGAGGCAAGGGAAATGGTCAAACTGGCGAGGGATGCAATGGGAAATAATAATCGCCGCAAAGGATCAAAGAGAAAATTAAGAAAAGATGGAGACCCTCTGAAGGCTATCTCCGCTTTGGCATCAAAAAGACCGCGCAAAGTTAGGAAGACTGGTGGAAGCGATGGCAACAATAGCAGTGATAGACATAAACGCAAAAGCAACAAGGGTTTATGA 1803 0.4237 MAETKLKETVHEEEEKEEADNKSFEELGVDARLLRALQKKEIEKPTPIQAVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFIVSGDRKKLAPNAFVLVPTRELCQQVYAEVLSLVELCRVQLKVVQLNSNMLANDLRAALAGPPDILISTPACIAKCLSGGILKAASINESLETLVLDEADLLLSYGYENDIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNNKDEIIPKSVQQFWISCSTSDKLLYILAVLKLGLVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVSKESNVVSRKSRKRAKVKLDSEFGVVRGIDFKNVFTVINFEMPQNVEGYVHRIGRTGRAYNSGTSVSLVSPDEMATLEEIRSFVGDDENKGTSSIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKLKAHFETNPRDLDLLKHDKVLSKNAPPPHLRDVPDYLLDKQTKEAREMVKLARDAMGNNNRRKGSKRKLRKDGDPLKAISALASKRPRKVRKTGGSDGNNSSDRHKRKSNKGL* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1497 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 429 IPR027417 -
Vra8g1497 600 Pfam Helicase conserved C-terminal domain 262 405 IPR001650 -
Vra8g1497 600 Gene3D - 1 236 IPR027417 -
Vra8g1497 600 MobiDBLite consensus disorder prediction 577 594 - -
Vra8g1497 600 Gene3D - 239 444 IPR027417 -
Vra8g1497 600 CDD DEADc_DDX56 29 236 - -
Vra8g1497 600 PANTHER RNA HELICASE 8 532 - -
Vra8g1497 600 MobiDBLite consensus disorder prediction 1 23 - -
Vra8g1497 600 SMART ultradead3 41 254 IPR014001 -
Vra8g1497 600 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 22 50 IPR014014 GO:0003724
Vra8g1497 600 MobiDBLite consensus disorder prediction 540 600 - -
Vra8g1497 600 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 234 IPR014001 -
Vra8g1497 600 SMART helicmild6 291 405 IPR001650 -
Vra8g1497 600 CDD SF2_C_DEAD 251 414 - -
Vra8g1497 600 Pfam DEAD/DEAH box helicase 46 223 IPR011545 GO:0003676|GO:0005524
Vra8g1497 600 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 8 532 - -
Vra8g1497 600 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 451 IPR001650 -
Vra8g1497 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 235 IPR027417 -
Vra8g1497 600 Coils Coil 475 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1497 Vra-Chr8 31897377 31905255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1497 23 445 Eukaryotic Initiation Factors Gene Family AT3G19760 25.532 5.98e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1497 K14810 - gmx:100800749 1010.75