Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1495 ATGGGAAGGAATGCGATGGATGGGAACGACACATGTTGGGACAAAGTCATTGCAGAAATGATTGAAATGGGTTTCGAGCATTCGAGCATAGTCGAAGCCATTAAAGTAGTGGGTCCATCTGTTCCCAGCGCTGTGGAACACATTCTCAATTCTACTACTGAAGAACCATCCACTACCCACACCTCCAATTCGCATGCCCGCAATGGGAATGCTCTCAAAAAACGACCTTTGCGCAAGTGTTTAGTTCGACAATCCAATATATTCGACCATTTCCGTTCCAATGACGATGTCGAAGAACACAAGAAGGAAATCCCTCAATTGGGGATTAAACCCAACCCCATTGTGCTTTCAGAGCCTTTTGAAGCGCAAGATTTGGACGTTGAATCTGATTGGGAGCAGAAGACTAGCAATCTGATGAAAAAGCATTTTGGTTTTTCATCCTTGAAGAGTTTTCAGAAGGAAGCCATCTCTGCCTGGGTTGTTCACAAAGACTGTCTTGTCCTCGCTGCAACAGGATCCGGGAAATCTCTGTGCTTTCAGATTCCTGCATTGTTTTCTGGCAAAGTGGTGGTTGTGATTTCGCCCTTGATAAGCCTCATGCATGACCAGTGTTTAAAGCTGACTAGACATGGGATCAGTGCGTGCTTTCTTGGCTCCGGGCAACCAGATAACACCGTTGAACAGAAAGCAATGAGAGGATTGTATAGTATAGTGTATATTTGCCCAGAGACTGTTCTAAGATTGATTCAACCACTGCAGAAGCTTGCAGAAAGTCGTGGTATTGCTTTATTTGCAATTGACGAGGTACACTGTGTTTCGAAATGGGGTCATGATTTTCGTCCAGATTACAGGCGACTGTCTGTGCTGAGAGAAAATTTCAGTACAAGCAAGCTAAAATCCCTAAAATTTGATATACCTCTGATGGCCTTAACAGCTACAGCTACAAAAAGAGTACGGGAAGACATTTTAAAATCATTGCAAATGTCAAAAGAAACGAAAGTTTGCCTTACATCATTTTTTAGACCTAACTTACGATTCATGGTAAAACATAGTCGAGTATCACAGGCTTCTTATGCAAAAGATTTTCATGAATTGATTCGTGTATATGGTAGAAAGAAAAATATTGATGAAAAGGAAAAGGTTTTCATCTCGGATGATTCAGATCAGATTTCTAATAGCTCCGATGCTAGTAGTATATCTGATACAGACAGTGTTTCACCTGATGACATGGATGACAACCAAGATGATTATGCTTATAGAGATATTAATATAATGCACTCAGGAAACTCTGATGACTTTTTAACTGGAAAAGAATTGTCAATTGAATTCCTGGAAAATGATATCGATGCCTTTCAAAGTATGGATAACTTAGATGTTGCCCGTGGTGACTTCTGTGTGCTACCTCACAAGGAATTGGAATTATCCAAGAACACCAACATACCTAAGAAACCAGAAGGAAGAGTAAAAATTCTTAACGAGCCTTTGGAACAAGGACCAACAATCATATATGTACCCACCAGAAAAGAAACTCTGAGAATTGCGAAGTACCTATGCAAGTTTGGTTTGAAGGCAGCTGCTTATAATGCAGGGCTTCCCAAATTGCATCTAAGAAAGGTTCATAAAGAGTTTCACGAAAATGGTTTAGAGGTTATTGTTGCTACAATAGCTTTTGGAATGGGTATTGACAAATCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTAGAAGCATACTATCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTATCAGATTGCATTCTGTATGCAAACCTAGCAAGCAAGCCATCACTTTTGCCTAGTCGAAAAAGTGAAGATCAGAAAAAACAAGCATATATTATGTTGTCTGACTGTTTCAGATATGGAATGAATACTTCATGCTGTCGAGCTAAGATTCTTGTTGAATACTTTGGAGAGGATTTCGGTCATCAGAAATGTCACTTATGTGATGTGTGCATTGATGGTCCACCTAAAAAGCAGAATCTAAAAGAGGAGGCCTGTATTTTTCTGCAAACTATAGGTGCCCAAAATCAGGGGCGTAGGGATTCCAAGGATTACTCATATGACGATGATATACATTTTGACTACAATTACAGAGGACAAAGAGAGAGGCCGAATCTTAGGATGTTGGTTGGAAAAATAAGGCAGCAGACTTGTTTTCACTTGAAAAATGTCCGTATACAGTTTCAAAAGTTTTCAACCACTGACATGTTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTAAAGGATACATCAGAGAAGGAGATGACAAGAGCCATGTTCAGGCAAAATTCCCGGAATTTGTGAGGTCCATGAATGAGGAAGCTTTCTGGGTTTACCCTGAAGCAGATATGTTGCTTGCAAGAAAATTAACTGAGAAACCATTTTCCTCATTCTCAGAATGGGGAAAGGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGCCTAGAAAGAATGGGAGTGAAGAGAAAGTCAGGGATGGTGTCAAGTTCCAAAAGGAAACCAAAGAGAAAAGTGCAACATGATTTGAGGACTTCTCGTGGCAGACTAACAGCAAAACTCTCAAAATATAAGTGA 2613 0.406 MGRNAMDGNDTCWDKVIAEMIEMGFEHSSIVEAIKVVGPSVPSAVEHILNSTTEEPSTTHTSNSHARNGNALKKRPLRKCLVRQSNIFDHFRSNDDVEEHKKEIPQLGIKPNPIVLSEPFEAQDLDVESDWEQKTSNLMKKHFGFSSLKSFQKEAISAWVVHKDCLVLAATGSGKSLCFQIPALFSGKVVVVISPLISLMHDQCLKLTRHGISACFLGSGQPDNTVEQKAMRGLYSIVYICPETVLRLIQPLQKLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFSTSKLKSLKFDIPLMALTATATKRVREDILKSLQMSKETKVCLTSFFRPNLRFMVKHSRVSQASYAKDFHELIRVYGRKKNIDEKEKVFISDDSDQISNSSDASSISDTDSVSPDDMDDNQDDYAYRDINIMHSGNSDDFLTGKELSIEFLENDIDAFQSMDNLDVARGDFCVLPHKELELSKNTNIPKKPEGRVKILNEPLEQGPTIIYVPTRKETLRIAKYLCKFGLKAAAYNAGLPKLHLRKVHKEFHENGLEVIVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLSDCILYANLASKPSLLPSRKSEDQKKQAYIMLSDCFRYGMNTSCCRAKILVEYFGEDFGHQKCHLCDVCIDGPPKKQNLKEEACIFLQTIGAQNQGRRDSKDYSYDDDIHFDYNYRGQRERPNLRMLVGKIRQQTCFHLKNVRIQFQKFSTTDMLWWRGLARILEVKGYIREGDDKSHVQAKFPEFVRSMNEEAFWVYPEADMLLARKLTEKPFSSFSEWGKGWADPEIRRQRLERMGVKRKSGMVSSSKRKPKRKVQHDLRTSRGRLTAKLSKYK* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1495 870 SMART helicmild6 511 592 IPR001650 -
Vra8g1495 870 MobiDBLite consensus disorder prediction 829 870 - -
Vra8g1495 870 Pfam Helicase conserved C-terminal domain 489 591 IPR001650 -
Vra8g1495 870 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 7 857 - -
Vra8g1495 870 Gene3D - 604 791 IPR036388 -
Vra8g1495 870 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 487 645 IPR001650 -
Vra8g1495 870 Gene3D - 470 601 IPR027417 -
Vra8g1495 870 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 51 IPR015940 -
Vra8g1495 870 Gene3D - 117 340 IPR027417 -
Vra8g1495 870 Pfam DEAD/DEAH box helicase 151 318 IPR011545 GO:0003676|GO:0005524
Vra8g1495 870 PANTHER DNA HELICASE RECQ FAMILY MEMBER 7 857 - -
Vra8g1495 870 MobiDBLite consensus disorder prediction 839 855 - -
Vra8g1495 870 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 332 IPR014001 -
Vra8g1495 870 SMART ultradead3 144 349 IPR014001 -
Vra8g1495 870 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 138 367 IPR004589 GO:0004386|GO:0006310
Vra8g1495 870 Pfam RecQ zinc-binding 613 663 IPR032284 -
Vra8g1495 870 SUPERFAMILY UBA-like 13 56 IPR009060 GO:0005515
Vra8g1495 870 MobiDBLite consensus disorder prediction 386 413 - -
Vra8g1495 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 603 IPR027417 -
Vra8g1495 870 CDD DEXHc_RecQ 139 339 - -
Vra8g1495 870 MobiDBLite consensus disorder prediction 386 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1495 Vra-Chr8 31879257 31885998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1495 491 610 Eukaryotic Initiation Factors Gene Family AT5G11170 27.500 9.43e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1495 K10900 - gmx:100793222 1301.58