Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1486 ATGAGTCGAGGAGGTGTAATCGCTTCGAAGGGCAAGAAGAAGGGGGTGACATTCACCATTGATTGTGCGAAGCCAGTGGAGGACAAGATCATGGATATTGCGTCTCTCGAGAAGTTTCTTCAAGAGAGGATTAAGGTTGCTGGCAAGGCCGGTGCTCTCGGTGACACCGTCGCCGTCGCACGCGAGAAGACCAAAATCATTGTTACTTCCGACAGCAACTTCTCTAAACGGTACCTCAAGTACTTGACTAAGAAGTATTTGAAGAAGCACAACGTTCGTGACTGGCTCAGAGTGATTGCTTCTAACAAAGATAGAAGCGTTTATGAACTGAGGTACTTCAACATTGCTGAGAATGAAGGAGAGGAAGAAGATTAG 375 0.4667 MSRGGVIASKGKKKGVTFTIDCAKPVEDKIMDIASLEKFLQERIKVAGKAGALGDTVAVAREKTKIIVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1486 124 PANTHER 60S RIBOSOMAL PROTEIN L22-2 1 124 - -
Vra8g1486 124 Gene3D - 7 124 IPR038526 -
Vra8g1486 124 PANTHER 60S RIBOSOMAL PROTEIN L22 1 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vra8g1486 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1486 Vra-Chr8 31796962 31798106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1486 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 83.065 5.86e-65 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1486 K02891 - gmx:100499952 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1486 8 31796962 31798106 Vra8g1486 8 31796962 31798106 ECH
Vra10g0534 10 11229378 11230814 Vra8g1486 8 31796962 31798106 PCT