Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1480 ATGAGCGAGGAAGATGGACCAAGCAAGAGGAAAATCGCCTTTATTACTTTCTGTACCATCTTCCTTGTGGGTTGTGTCATAGGCATCGCATTTAGCGTTAACGTGGAGACGGAAAGTTCCGACAATGCAGGACAACAGAAGGACCGCGTTATTTCCTCTGTGAAAGCGGTGAAAATCCTTTGTAAACCCACAACGTACCAGAAAGAATGTGAGAATAGCCTGATGAAAGATGCTAGGAACATCACAGACTCCAGAGAACTCATTAAACTTGCATTCAGTGTAGCCATGAAGAAAATAGATAAAGAACTACAAAAAATAGATAACATGCGCAAGAATGAGAGTGACCCCAGAGCCAAGATGGCTCTTGCAACATGCAAGCAACTGCTCGGTCTTTCCACTGGAGAATTCCAAAGGTCAATTGAGAAAATGGGCAAGTTTGATCTCGACAATCTGAACAATATCCTCACTAGTTTGAAAGTTTGGCTTAGCGGTGCAATCACCTACCAAGAGACTTGCCTGGATGGTTTCAAGAACACCACCACCCATGCACGGATTAAGATGAGGAACTTGTTGACCACTTCCATGCACTTGAGCAGCAACGCCCTTGCCATCATCTCAACACTTGCTAGTGCTGTCGAATTGGTCGGGGGTCGCAACCTTGCTGAGGGTGGCGAACATGTTTTTGGTCACGCTGAGGTTATTCCCTCGTGGGTTGTTGATGATGATATTGGTGGTGGTGTTCGTAGACTCCTTCATCAACGTTCTTACAGATTGAAGGCTAATGCGATTGTGGCCAAAGATGGTAGCGAAAAGTTCAAGAGCATCGGCGAGGCATTAAAGAAGGTGCCTAAGAAGAATAAGAAGCCATTCGTGATTTACATTAGGGAGGGTGTTTATCGTGAGTACGTTGAAGTCGCTAAAACCATGACTCGGGTCGTCTTTGTCGGTGATGGTGCCAATAGAACACGAATCACAGGCAAGAGAAACTTCGTGGATGGGATGATTACTTACAGAACCGCCTCAGTTGCTATCCATGGAGATTACTTTGTGGCCCTGAATATAGGGTTTGAGAATTCCGCTGGTCCACAGAAACATGAAGCAGTAGCCATAAGGGTCCAAGCAGACAGATCCATTTTCTACAGATGCTCAATAGATGGGTACGAGGGGACGTTGCATGCTCATGCGATGCGTCAATTTTATAGGGAATGCACGGTTTCAGGCACCGTGGATTTTGTGTTTGGTGATGCAGTGGCTGTTTTTCAAAACTGCACTTTCGTGGTGAGAAAGCCATTGAAAAACCAACAATTGATTGTGACTTCTCAAGGTAGAAAGGAGAAGCAGCAACCATCAGGAATAGTGATCCAAGGAAGCTCCATCGTGGCTAAGCGTAAGTCTGATAGCAAGGCTTACCTTGGTCGTCCACTGAAGAATTACTCGAGGACCATCTTCATGAACACTTACATGGAGGACATTATCAAACATGAGGGGTATACGGCAAAGCAAGGACGACGGGGTCCTGCAGCTATGAACACTTGTTTCTATGGTGAGTACAATAACAGTGGTCCTGGTTCAAACAAAACGAAGCGTGTAAAATGGCGTGGGATCAAGAAACTCAATGCAGAATCTGCGAGGCAATTCACACCACTCAAGTTTTTTCATGGAGATCAATGGGTTAGAATTACTAGGATTCCTTACTACCCTGACATCCTCCCCAAGCGCTAA 1722 0.4535 MSEEDGPSKRKIAFITFCTIFLVGCVIGIAFSVNVETESSDNAGQQKDRVISSVKAVKILCKPTTYQKECENSLMKDARNITDSRELIKLAFSVAMKKIDKELQKIDNMRKNESDPRAKMALATCKQLLGLSTGEFQRSIEKMGKFDLDNLNNILTSLKVWLSGAITYQETCLDGFKNTTTHARIKMRNLLTTSMHLSSNALAIISTLASAVELVGGRNLAEGGEHVFGHAEVIPSWVVDDDIGGGVRRLLHQRSYRLKANAIVAKDGSEKFKSIGEALKKVPKKNKKPFVIYIREGVYREYVEVAKTMTRVVFVGDGANRTRITGKRNFVDGMITYRTASVAIHGDYFVALNIGFENSAGPQKHEAVAIRVQADRSIFYRCSIDGYEGTLHAHAMRQFYRECTVSGTVDFVFGDAVAVFQNCTFVVRKPLKNQQLIVTSQGRKEKQQPSGIVIQGSSIVAKRKSDSKAYLGRPLKNYSRTIFMNTYMEDIIKHEGYTAKQGRRGPAAMNTCFYGEYNNSGPGSNKTKRVKWRGIKKLNAESARQFTPLKFFHGDQWVRITRIPYYPDILPKR* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1480 573 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Vra8g1480 573 Gene3D - 255 569 IPR012334 -
Vra8g1480 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 209 IPR035513 -
Vra8g1480 573 CDD PMEI-like_3 60 210 - -
Vra8g1480 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 208 IPR035513 -
Vra8g1480 573 SUPERFAMILY Pectin lyase-like 258 567 IPR011050 -
Vra8g1480 573 PANTHER PECTINESTERASE 13 567 - -
Vra8g1480 573 SMART PMEI_2 52 204 IPR006501 GO:0004857
Vra8g1480 573 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 208 IPR006501 GO:0004857
Vra8g1480 573 Pfam Pectinesterase 261 555 IPR000070 GO:0030599|GO:0042545
Vra8g1480 573 Pfam Plant invertase/pectin methylesterase inhibitor 56 204 IPR006501 GO:0004857
Vra8g1480 573 PANTHER PECTINESTERASE 13 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1480 Vra-Chr8 31761067 31762909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1480 3 570 Carbohydrate Esterase AT3G05610 44.406 2.08e-176 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1480 K01051 - gmx:100810853 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1480 8 31761067 31762909 Vra8g1480 8 31761067 31762909 ECH
Vra10g0523 10 11117391 11119675 Vra8g1480 8 31761067 31762909 PCT