Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1479 ATGGCAACAAAAATGAAGACCTGGACCACCTTGTACACCCTTGTTTTCCTCTTCATTCTCTTCGTTTCTTCCTCTCATGTTGCTTTCTCCTTCTCAGATAGCACATGCAACACTACACCCTATCCTGCATTCTGCAAAACCACTCTACCACCTCAATATTTATCCACACATGACCAATGCCGTTTCCTCCTTCACCAATCCTTATCAACAACAAAAACGCTTGCTGCATTGCTCTCTTCTTATCTCTCAAACAGCTACGCCATTCCTAGTTCAACATTGCACGCCCTTCAAGATTGCTTCAACCTTTCACAACTCAACATTGATTTCTTCTCCAATGTCCTCCAAGCCATTGAAAGCACCGTGACTGGTTATCAAGTCTACGACTTGCATACCTTGCTAAGTGCCACTTTAACCAATCAACAAACGTGCTTGAATGGTTTTAACGAGGTAACTCCCTATCCTGCAGTTACCAGTGCCTTGTCAAGTCCACTTTCCGATGCGATCAAACTATATTCCATATCTCTGGCCCTTTTCACCCGTGGTTGGGTTAGCGATGCCATGGAAGGATCAACCACAGTTGAGACTATTGCTAATAGAAAGTTACTCCAAACAAGCGTTGACAATGTGGAGGTGAGGCAAAAGGTGGTGGTGAACCCTGATGGGTCTGGTGATTTCACCACCATAAATGATGCAGTGGCTGCTGCACCTGAAAACAGCGGCACCAACAACGGGTACCATGTAATCTATGTTGTCGCGGGGATTTACAATGAGTACGTCTCTATTCCTAAGAGCAAGCAGAACCTGATGTTGGTTGGAGATGGTATCAACCGCACCGTCCTCACTGGCGATCGCAGCGTGGTCGATGGCTGGACCACTTTCCAATCTGCAACTTTTGCTGTTGTTGGAAAAGGGTTTGTTGCCGTGAACATAACATTTCGTAACACTGCTGGGTCCAGCAAGCATCAAGCTGTGGCTGTGAGAAACGGGGCAGACATGTCTACGTTCTATAATTGCAGTTTTGAGGGTTACCAAGACACACTGTACGTACACTCCCTAAGGCAATTCTACAAACGCTGTGACATTTATGGCACAGTGGATTTTATATTCGGCAATGCAGCAACAGTATTCCAAGATTGTAGCATGTATCCAAGACTCCCTATGCAAAATCAGTTCAATGCAATCACAGCACAAGGCCGAACAGATCCAAACCAAAACACTGGAATCTCCATACAGAACTGCTGCATAATAGGAGCCAGTGAATTGGGTGATGCTACTAGCAATTATAATGGGATACAGACATATTTGGGTAGGCCTTGGAAGGAGTATTCTAGGACTGTTTACATAAAATCTTGCATGGATGGCCTAATTGATCCAAAGGGGTGGACAGAATGGTCAGGGGATTTTGCTTTGAGCACACTGTATTATGCAGAGTTTGCTAACTGGGGACCTGGTTCAAACACCAGCAATAGGGTCACATGGGAAGGCTACCATCTCATAGATGAAAAGGATGCACTTGACTTCACGGTGCAGAAGTTTATTCAAGGTGACAAATGGCTACCCTCCACAGGAGTACCTTTCAACGCTGGGTTACAGTAA 1596 0.4518 MATKMKTWTTLYTLVFLFILFVSSSHVAFSFSDSTCNTTPYPAFCKTTLPPQYLSTHDQCRFLLHQSLSTTKTLAALLSSYLSNSYAIPSSTLHALQDCFNLSQLNIDFFSNVLQAIESTVTGYQVYDLHTLLSATLTNQQTCLNGFNEVTPYPAVTSALSSPLSDAIKLYSISLALFTRGWVSDAMEGSTTVETIANRKLLQTSVDNVEVRQKVVVNPDGSGDFTTINDAVAAAPENSGTNNGYHVIYVVAGIYNEYVSIPKSKQNLMLVGDGINRTVLTGDRSVVDGWTTFQSATFAVVGKGFVAVNITFRNTAGSSKHQAVAVRNGADMSTFYNCSFEGYQDTLYVHSLRQFYKRCDIYGTVDFIFGNAATVFQDCSMYPRLPMQNQFNAITAQGRTDPNQNTGISIQNCCIIGASELGDATSNYNGIQTYLGRPWKEYSRTVYIKSCMDGLIDPKGWTEWSGDFALSTLYYAEFANWGPGSNTSNRVTWEGYHLIDEKDALDFTVQKFIQGDKWLPSTGVPFNAGLQ* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1479 531 SUPERFAMILY Pectin lyase-like 215 529 IPR011050 -
Vra8g1479 531 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 178 IPR006501 GO:0004857
Vra8g1479 531 CDD PMEI-like_3 34 182 - -
Vra8g1479 531 Pfam Pectinesterase 215 516 IPR000070 GO:0030599|GO:0042545
Vra8g1479 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 180 IPR035513 -
Vra8g1479 531 SMART PMEI_2 27 177 IPR006501 GO:0004857
Vra8g1479 531 Pfam Plant invertase/pectin methylesterase inhibitor 31 177 IPR006501 GO:0004857
Vra8g1479 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 180 IPR035513 -
Vra8g1479 531 Gene3D - 208 530 IPR012334 -
Vra8g1479 531 PANTHER PECTINESTERASE 15 529 - -
Vra8g1479 531 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17-RELATED 15 529 - -
Vra8g1479 531 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1479 Vra-Chr8 31758189 31760433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1479 14 530 Carbohydrate Esterase AT4G02330 49.912 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1479 K01051 - gmx:100810329 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0522 10 11111323 11113909 Vra8g1479 8 31758189 31760433 PCT