Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1469 ATGAGTAGGACTGAATTATCTAATATGAAGCAGCCACCTGTCCCACTGGCAACCTTGATTGGCCGGGAGCTACGAAATGGAAAAATTGAAAAGCCTTTTGTGAAGTATGGGCAAGCTGGCTTGGCAAAGAAAGGAGAAGATTACTTTCTAATCAAGACGGATTGCCAGAGAGTTCCTGGGGATTCATCAACACTTTTTTCTGTCTTTGCGATCTTTGATGGGCATAATGGTATATCTGCTGCTATCTTTGCGAAGGAAAACATACTAAGTAATGTTTTGAGTGCAATACCGCAAGATATCAGTAGGGATGAGTGGCTTCAAGCTCTGCCTCGTGCTCTAGTTGTTGCTTTTGTGAAAACTGACATAGAGTTTCAGAAGAAAGGGGAAACTTCTGGAACAACAGCTACATTTGTTCTGATTGATGGATGGACTGTTACTGTTGCATCTGTCGGGGATTCCCGATGCATATTAGATACACAGGGAGGTGTCGTCTCTCTCTTGACAGTTGATCACAGACTGGAAGAAAATGAAGAAGAGAGGGAACGCATTACTGCCAGTGGTGGTGAAGTAGGAAGACTGAACGTTTTTGGAGGCAATGAGGTAGGGCCTCTTCGCTGCTGGCCTGGTGGATTGTGCCTTTCTAGATCAATTGGTGACACAGATGTCGGTGAATTTATTGTGCCAATACCACACGTTAAGCAAGTGAAGCTTTCAAAAGCTGGTGGAAGACTTATTATAGCTTCTGATGGCATTTGGGATGCTTTATCTTCTGAAATGGCAGCCAAGTCATGCCGGGGTCTACCTGCTGAGCTGGCTGCAAAGATGGTGGTCAAGGAAGCTCTAAGGTCAAGGGGACTGAAGGATGATACAACTTGCCTTGTTGTAGATATTATTCCGTCAGATCATCCTGTATTACCGACCATTCCAACAAAGAAACATAATATGCTAACTTCCCTTATATTTGGAAAGAAATCTCAAAACTCTACAAGCAAAAGTACCAATAAGCTTTCTGCTGTAGGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCTATGCTTACAGAAAGATTGGGTAAGGATTTTCCATCTAGTACGAATTCTGGAATGTTCCGCTGTGCGGTTTGCCAAGCTGATCAACCCTCTGGAGATGGTTTATCAATGAACACTGGATCCTTTTTTTCTCCAGTATCTAAGCCATGGGAAGGTCCGTTCCTCTGCACAAACTGTCAGAAGAAGAAAGATGCCATGGAAGGAAAAAGGTCTAGCAGGCCCTCCGAAACAGCATAG 1287 0.4375 MSRTELSNMKQPPVPLATLIGRELRNGKIEKPFVKYGQAGLAKKGEDYFLIKTDCQRVPGDSSTLFSVFAIFDGHNGISAAIFAKENILSNVLSAIPQDISRDEWLQALPRALVVAFVKTDIEFQKKGETSGTTATFVLIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENEEERERITASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSKAGGRLIIASDGIWDALSSEMAAKSCRGLPAELAAKMVVKEALRSRGLKDDTTCLVVDIIPSDHPVLPTIPTKKHNMLTSLIFGKKSQNSTSKSTNKLSAVGVVEELFEEGSAMLTERLGKDFPSSTNSGMFRCAVCQADQPSGDGLSMNTGSFFSPVSKPWEGPFLCTNCQKKKDAMEGKRSSRPSETA* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1469 428 CDD PP2Cc 43 297 IPR001932 -
Vra8g1469 428 Coils Coil 428 428 - -
Vra8g1469 428 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 426 - -
Vra8g1469 428 SMART PP2C_4 23 295 IPR001932 -
Vra8g1469 428 Gene3D - 34 301 IPR036457 -
Vra8g1469 428 SUPERFAMILY PP2C-like 38 297 IPR036457 -
Vra8g1469 428 SMART PP2C_SIG_2 50 297 IPR001932 -
Vra8g1469 428 PANTHER ALPHABET, ISOFORM E-RELATED 2 426 - -
Vra8g1469 428 Pfam Protein phosphatase 2C 63 282 IPR001932 -
Vra8g1469 428 ProSiteProfiles PPM-type phosphatase domain profile. 25 297 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1469 Vra-Chr8 31624872 31628047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1469 1 427 PP2C-type Phosphatase Gene Family AT1G09160 76.112 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1469 - - gmx:100794630 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1469 8 31624872 31628047 Vra8g1469 8 31624872 31628047 ECH