Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1468 ATGGCGCCAGAGCTAGCCTTGCCATTCTCTGTTGTATCTGTGGTCGAAGATGTTCTTCAGACGCACGGAAGCTGTTTAAGCGACATTCACTTGGCATCAAGGATGGCAGAAGAAGCTTCCTCAAGAAGGAATGAAGCAGCTGGGTGGCTAAGAAAGACAGTTGGAGTTGTTGGAGGGAAAGACATTCCAGATGAGCCTACTGAAGAAGATTTCAGGATTGCATTACGAAGTGGCATTGTCCTTTGCAATGCTCTTAACAAAATTCAACCCGGAGCAGTGCCCAAGGTAGTTGAAGTCCCCTGCGATAGTGTTGTCATTCCTGATGGGGCACCTCTGTCTACTTACCAATACTTTGAAAATGTAAGGAATTTTCTGGTAACTATGGAAGAAATGGGGCTTCCCACCTTTGAAGTGTCCGATATAGAACAGGGAGGAAAATCTTCGAGGATAGTGAATTGTGTTTTAGCACTTAAGTCTTACAGTGAATGGAAACAGGGAGGAAAAAATGGGTCATGGAAATATGGTGGGAATCCAAAGCCACCTACCAATGCTAAACCAGCTATTATGATGAAAGTCTCAGAACCATTCATGAGGTCTTTGTCAAAGGGTAGTAGGTTAGGCGATAAAGATGGGTTACTGAATGATATTTCTACAAACAGTGAAGGGGGTTCTATACCCTCCCTGAATTTACTAATTCGTGAAATTTTATCTGACAAGAAGCTAGAAGAAATTCCCACTGTGGTGGAGTCTCTACTTAGCAGAGTCATGGAGGAGTTTGAAAAACGCTTGCTAATCCAACAAGAAATGTTCAAAACAACTCAAAACCATAAGGCAGTGCCTGAAGCAGAGGATTCCAATGTGAAATCTGCTTGTAATGGTGAAGAGATGGAACAAGATAAAGATGTGGTGGTTAAACACAAGGAATTTGTTGATGTGAAGTACAATGTCGATGAAGAACCAAACAGCCAGTATTTTAAGCAGCAAGAGTTATTTCAGCAGCAAAACGAGAACGTCCAGGAATTGAAAATGATGGTTCATCAAACAAAAACAGGAATGCAGGTTCTGCAAAATAAATACCAGGAGGATATGATCTATCTAAGTAAACACCTGCATGGCCTAGCTTCTGCTGCTTCAGGATATCAGAAAATTTTTGAAGAAAACCGCAAGCTTTATAATCAATTGCAAGACCTTAAAGGAAATATTAGGGTGTACTGTAGAGTTCGTCCCTCAAAAGGTGCCCAACCAAATCATCATTGCTCTGTCAGTAACATAGATGAAGGAAGTATATCACTCATAGTGCCATCCAAAAACGGGAAAGACGGGAAGAAGACATTTAATTTCAACAGAGTCTTTGGTCCTTCTTCAACCCAAGCGGAGGTTTTCTCAGATACAAAACCACTTATTCGTTCGGTTCTTGATGGCTACAACGTGTGTATATTTGCTTATGGTCAGACAGGATCAGGAAAAACACACACTATGTCTGGACCAGACAATTATACTGAGGAAACAGTGGGTGTCAACTTCCGGGCTCTGAAAGATCTTTTCCAAATCTCGGAGCAGAGAAAAGACACCATTCACTATGATATATCTGTTCAAATGCTTGAGATTTACAATGAACAAGTCAGAGATCTATTATCGACAGACAGTACTCACAAAAGATATCCTTTTTTAGAAATCCGCAACAGTTCTCATAATGGCATTAACGTGCCAGATGCAAACCTTGTTCCTGTTTCATCCACTTCCGATGTCTTAAAGTTAATGAACTTGGGACAAAATAACCGGGCAGTTAGTTCTACTGCCATGAATGATCGGAGTAGTCGTTCTCATAGCTGCTTGACAGTTCATGTTCACGGAAGAGAGCTAGCATCAGGGAATAGTCTTCGTGGTTGTATCCACTTAGTTGACTTGGCAGGAAGTGAGAGGGTTGATAAATCTGAGGTCACAGGAGATAGGCTGAAGGAGGCTCAACATATTAACAAGTCGCTTTCTGCATTAGGAGATGTAATTGCTTCTCTTGCCCAAAAGCAATCACACGTTCCTTATAGGAACAGCAAACTTACTCAGTTACTTCAAGATTCTCTCGGAGGCCAAGCAAAGACACTTATGTTTGTTCATGTTAGTCCCGAGCCAGATGCCATTGGAGAAACAATCAGTACATTGAAGTTCGCAGAAAGGGTATCCACTGTTGAACTTGGTGCTGCTCGAGTTAACAAAGATAGTTCAGAGGTCAAAGAGCTTAAAGAACAGATTGCGATTCTAAAGGCAACCTCCGCCAGGAAGGATGGAGAATCGGAACAATTTCATCAGTCTGCAAATAGCATTTCTGAAACTCCAAAGTCCAAATCTCTATTGTCTTCCACTGCACGGTCTCCTACTTCGTCTCATGGAAATCGTAAGCCACCAAGGGAAGATTCCAGTAACACCGTTGAGGACAAGAAAAAGGGTAGCCCGAAGCTCACGAAAAGAGGAAGCCTTGACCCCTTGGACGTTCGTAGGAACTCACCACCTTGGCCACATCATGCAGAGGAAAACGGAAATGAGGATGATAAAGAATTGGTTTCTGGGGATTGTCTTGGTAAGCATACAAAAAGGAATGGCCAAAACAACCTCGTGGGAGACTGTGATACAGAAAGCAAGCGGTCATCTTCTCCAACGCTAAGTCCCTTGGATATTTTTGACCCTTCCAAAATATGCACGGAGGTGACCACCATAAATGACTGTGATGAATTTGAGTTAGCAACCAGTGAAAGCTCAGAATCAGACAAGAGTTGGGAATCATCACATGTACACGTACCAAAAGCAACCACTCTTTCCAACGGAGTAGCAGCTAAAACAAAAAAATCACCACATTCAAGACAAGCCAAGAATCAAGAAAACAGGAGTAAGATCCCCTCATTGTCTCCTTCATCATCAAGGAGACAACCGACGGTAGTTAGTCAACAGAAAAAGCATCTAGATGCAAAAAGAAGAACTGGAAATGCCAAATGA 2988 0.4217 MAPELALPFSVVSVVEDVLQTHGSCLSDIHLASRMAEEASSRRNEAAGWLRKTVGVVGGKDIPDEPTEEDFRIALRSGIVLCNALNKIQPGAVPKVVEVPCDSVVIPDGAPLSTYQYFENVRNFLVTMEEMGLPTFEVSDIEQGGKSSRIVNCVLALKSYSEWKQGGKNGSWKYGGNPKPPTNAKPAIMMKVSEPFMRSLSKGSRLGDKDGLLNDISTNSEGGSIPSLNLLIREILSDKKLEEIPTVVESLLSRVMEEFEKRLLIQQEMFKTTQNHKAVPEAEDSNVKSACNGEEMEQDKDVVVKHKEFVDVKYNVDEEPNSQYFKQQELFQQQNENVQELKMMVHQTKTGMQVLQNKYQEDMIYLSKHLHGLASAASGYQKIFEENRKLYNQLQDLKGNIRVYCRVRPSKGAQPNHHCSVSNIDEGSISLIVPSKNGKDGKKTFNFNRVFGPSSTQAEVFSDTKPLIRSVLDGYNVCIFAYGQTGSGKTHTMSGPDNYTEETVGVNFRALKDLFQISEQRKDTIHYDISVQMLEIYNEQVRDLLSTDSTHKRYPFLEIRNSSHNGINVPDANLVPVSSTSDVLKLMNLGQNNRAVSSTAMNDRSSRSHSCLTVHVHGRELASGNSLRGCIHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKQSHVPYRNSKLTQLLQDSLGGQAKTLMFVHVSPEPDAIGETISTLKFAERVSTVELGAARVNKDSSEVKELKEQIAILKATSARKDGESEQFHQSANSISETPKSKSLLSSTARSPTSSHGNRKPPREDSSNTVEDKKKGSPKLTKRGSLDPLDVRRNSPPWPHHAEENGNEDDKELVSGDCLGKHTKRNGQNNLVGDCDTESKRSSSPTLSPLDIFDPSKICTEVTTINDCDEFELATSESSESDKSWESSHVHVPKATTLSNGVAAKTKKSPHSRQAKNQENRSKIPSLSPSSSRRQPTVVSQQKKHLDAKRRTGNAK* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1468 995 PANTHER KINESIN-LIKE PROTEIN KIN-14H 6 990 - -
Vra8g1468 995 ProSiteProfiles Calponin homology (CH) domain profile. 40 162 IPR001715 GO:0005515
Vra8g1468 995 SMART kinesin_4 398 737 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1468 995 Gene3D Kinesin motor domain 342 731 IPR036961 -
Vra8g1468 995 MobiDBLite consensus disorder prediction 758 894 - -
Vra8g1468 995 MobiDBLite consensus disorder prediction 912 995 - -
Vra8g1468 995 Coils Coil 736 756 - -
Vra8g1468 995 MobiDBLite consensus disorder prediction 767 795 - -
Vra8g1468 995 CDD KISc_C_terminal 398 731 - -
Vra8g1468 995 PRINTS Kinesin heavy chain signature 474 495 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1468 995 PRINTS Kinesin heavy chain signature 599 616 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1468 995 PRINTS Kinesin heavy chain signature 630 648 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1468 995 PRINTS Kinesin heavy chain signature 679 700 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1468 995 MobiDBLite consensus disorder prediction 958 981 - -
Vra8g1468 995 SMART ch_5 42 160 IPR001715 GO:0005515
Vra8g1468 995 Gene3D - 35 175 IPR036872 -
Vra8g1468 995 SUPERFAMILY Calponin-homology domain, CH-domain 45 175 IPR036872 -
Vra8g1468 995 Pfam Calponin homology (CH) domain 41 162 IPR001715 GO:0005515
Vra8g1468 995 MobiDBLite consensus disorder prediction 929 946 - -
Vra8g1468 995 Pfam Kinesin motor domain 406 728 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1468 995 Coils Coil 380 400 - -
Vra8g1468 995 MobiDBLite consensus disorder prediction 861 889 - -
Vra8g1468 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 762 IPR027417 -
Vra8g1468 995 ProSiteProfiles Kinesin motor domain profile. 400 729 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1468 995 MobiDBLite consensus disorder prediction 796 858 - -
Vra8g1468 995 PANTHER KINESIN-LIKE PROTEIN KLP-3 6 990 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1468 Vra-Chr8 31610640 31617008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1468 388 765 Calmodulin-binding Proteins AT5G65930 42.368 1.29e-78 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1468 K10406 - gmx:100808197 1446.41