Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1467 ATGGTTAGGGGAGGAAGGTTTAGTGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAGGAGGGAGGTTCCGATGATTCGGATGAGGACTATGTGGTTTCAGATGATGGCAGAGAGGCGTCTGACTACTATTGCTCCTCCTTTGATGGATGTGCGTCAGAGGAAAGTTTTGGGAGTTTTTTGGCAGAGGAGGATGAGGAATTTCAAACAGTGAGGAATTTCAATAGATCCAAGGCAAAAAAGGGCACTGCTAGTAGGCCGAAAAATGCCAGTAAAAAACTGCACAAGAGGGAAAGAACTAAATATGCAGAAGAGGAGGAAGAAGAGGAGTTGGAGTTGGAGTTAGAGGAGGAGGTGGAAGAAGAAGAGGAGTTGGAGTTGGAGTTGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAAGAATACAAAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAAATTCAAGAAGCAAGGAATTTCAGTAGACCAAAGACAAAAAATGGTGTATGCAGTAAGAAAAGAAGTGCAGGAAAAATCTCCTCAAAGAGGGGAAGGAAAATGCACATAGAACTACTGGAAGAGGAGGAGGAGGAGGAGGAAGAGAAGGAGAAGGTGCACAGAGGTGGTGATGACAAAGAAGAGGAGGGAGATAGAGATGGAGAGGATGAAGATTTTGACTATGAGGATGAGGATGATGAGTTTTTTCCTGAGGAAGATGATTATTCAGATGAGGAAGAAGATATGAGAGGGAAAAAGAAGAACAATGATGGCATGAAAATGGTCAAGAAGGTTTTTCAGAAGAAAAGGTCATCTCTAGTTTCGACTAGAGGTAGAAAAAGCCAGAGTTCTAGAGCATCAAAGAAGCCCTTGAGAAAGAAAAGAAAGAATGGGAGGTTAAGGAAGAAAGTAAGATGTGCAGATGAAGATGAAGATGATTTTATAGATAATAGCCCAACCACGAGAACAAGTAGGAAAAAACGGGGCCAGAAGAGAAAAAGGGTACTTCTTTCAGATTCAGAATATCCATCTTCTGGATCGTCTGATTTTGAGTTTACTATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAAAAATTATGCGGTAATTTGAGAAATAACTTGAGGAGTGCGTCCCAACTAATAAACAATGAAGAGGTTGGTGTCCATGAAGAACAAATTCAGTTGCGGAAACCACCAGCTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGTAAAAAGTGAGATGGGTAAGCAAGTGTGTGGGATTTGTCTGTCTGAAGAAGATAAAAGAAGAGTTAGGGGAGTACTAAATTGTTGCACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGTTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGCAAGCCTGCACGGTCAACCACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCCGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATCTGTTATTTGTTCAGAGTGCAATCAAGGTGGAGATGATGGCCTCATGCTACTATGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCAGTCGCTCTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGTGGCTGATCCAAGGTTGACAATCCAGAACCTTCCTGTTAGAGCGCCTCCTGCTCTACATGTCCGAGAAAGTATAGACCTCAACTTGATTTCCTCACCCCGTGCAGCTATTAATCAAGGTTTTGTGCATCTTCCATCTTCTAGATTTAGTAGCAGAAGTGTTGAAGGATCTTCTCCTGTATCTGGAGGAGCACCAACGTTATCAGAGAGACGCTGGATACACCGTCAAATTCAGCAATTACTTTCAATAGATAGGATGACTGCTACACCTGGCAGAACCACCAATGGTATTTCCGCTACCAGTTCAACTAGTAACTTGTATAGCTCTCAAATTGATCAAAGTAGGGGAACCGCCACTCTTCATGTAAGGACGCAGGATGTGGGAACATCATACCACACATTTTTTGATGACAGATTATGCAACAATACCTCCCCGGTAATGCAGAATGGGCCATTATGGCCTGGACTTATGGCGACACCCCCAGTACCAGATTGTGAACAAGTTCATCAGTTCAGCAGATCAAATATTGTCCCTGATGATGGCTTATCCACTGCTGTCAGAGAAGAGACGAACTTTCACACTGCGAAGGAGCAGTTGCAGTCGATGGTTAAAAGCCACTTAAAGAGCTTGTCTCAAAATGTTGATTTAGGCCACAGTACTTTCAAGGATATTGCAAGGAGTTCTATGCACACCATACTAGCAGCCTGTGATCTTGAGCACAAGAACAATGAGGTTTGCAACGTGCCTCCTCCGTCTGCCTGTCCGCACATGGAACTAATGGCTGGCGGGCCAACTAGTCTGATTAAAGGTTGCTGCTCATCGTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGGTTTTGGACACAAGAGTTTCCTCCCAGTGGTTACGATTAGGTTTATAG 2652 0.4393 MVRGGRFSGKRNFRKRVRSKEGGSDDSDEDYVVSDDGREASDYYCSSFDGCASEESFGSFLAEEDEEFQTVRNFNRSKAKKGTASRPKNASKKLHKRERTKYAEEEEEEELELELEEEVEEEEELELELEEEEEEEEEEEEYKVEEEEEEEEEIQEARNFSRPKTKNGVCSKKRSAGKISSKRGRKMHIELLEEEEEEEEEKEKVHRGGDDKEEEGDRDGEDEDFDYEDEDDEFFPEEDDYSDEEEDMRGKKKNNDGMKMVKKVFQKKRSSLVSTRGRKSQSSRASKKPLRKKRKNGRLRKKVRCADEDEDDFIDNSPTTRTSRKKRGQKRKRVLLSDSEYPSSGSSDFEFTISEEEREQVREAKKLCGNLRNNLRSASQLINNEEVGVHEEQIQLRKPPARKGKEKIEEPQGRKGKEKVEVKSEMGKQVCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYESVICSECNQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADPRLTIQNLPVRAPPALHVRESIDLNLISSPRAAINQGFVHLPSSRFSSRSVEGSSPVSGGAPTLSERRWIHRQIQQLLSIDRMTATPGRTTNGISATSSTSNLYSSQIDQSRGTATLHVRTQDVGTSYHTFFDDRLCNNTSPVMQNGPLWPGLMATPPVPDCEQVHQFSRSNIVPDDGLSTAVREETNFHTAKEQLQSMVKSHLKSLSQNVDLGHSTFKDIARSSMHTILAACDLEHKNNEVCNVPPPSACPHMELMAGGPTSLIKGCCSSCFDSFVGDVVKRVLDTRVSSQWLRLGL* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1467 883 SMART PHD_3 523 568 IPR001965 -
Vra8g1467 883 MobiDBLite consensus disorder prediction 245 263 - -
Vra8g1467 883 MobiDBLite consensus disorder prediction 215 244 - -
Vra8g1467 883 CDD RING-HC_Topors 431 473 - -
Vra8g1467 883 MobiDBLite consensus disorder prediction 391 421 - -
Vra8g1467 883 MobiDBLite consensus disorder prediction 1 36 - -
Vra8g1467 883 Pfam Ring finger domain 430 473 IPR001841 -
Vra8g1467 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 495 571 IPR013083 -
Vra8g1467 883 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 120 139 IPR003903 -
Vra8g1467 883 PANTHER F18C1.6 PROTEIN 1 135 - -
Vra8g1467 883 PANTHER F18C1.6 PROTEIN 134 872 - -
Vra8g1467 883 SUPERFAMILY RING/U-box 430 479 - -
Vra8g1467 883 ProSiteProfiles Zinc finger RING-type profile. 431 473 IPR001841 -
Vra8g1467 883 Coils Coil 185 205 - -
Vra8g1467 883 MobiDBLite consensus disorder prediction 167 182 - -
Vra8g1467 883 Coils Coil 354 381 - -
Vra8g1467 883 ProSiteProfiles Zinc finger PHD-type profile. 521 570 IPR019787 -
Vra8g1467 883 MobiDBLite consensus disorder prediction 71 350 - -
Vra8g1467 883 MobiDBLite consensus disorder prediction 301 322 - -
Vra8g1467 883 Coils Coil 101 157 - -
Vra8g1467 883 MobiDBLite consensus disorder prediction 105 154 - -
Vra8g1467 883 ProSitePatterns Zinc finger RING-type signature. 450 459 IPR017907 -
Vra8g1467 883 SMART ring_2 431 472 IPR001841 -
Vra8g1467 883 PANTHER F18C1.6 PROTEIN 134 872 - -
Vra8g1467 883 PANTHER F18C1.6 PROTEIN 1 135 - -
Vra8g1467 883 SUPERFAMILY FYVE/PHD zinc finger 494 569 IPR011011 -
Vra8g1467 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 409 494 IPR013083 -
Vra8g1467 883 MobiDBLite consensus disorder prediction 281 300 - -
Vra8g1467 883 Pfam PHD-finger 523 569 IPR019787 -
Vra8g1467 883 MobiDBLite consensus disorder prediction 79 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1467 Vra-Chr8 31580999 31584964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1467 518 567 C2H2 Transcription Factor Family AT3G01460 46.154 1.11e-08 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra8g1467 PHD 2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1467 - - gmx:100797448 1235.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1467 8 31580999 31584964 Vra8g1467 8 31580999 31584964 ECH